contig_metadata
5 rows where bioproject = "PRJNA781196" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19886579 | 19886579 | PRJNA781196_P_NODE_65856_length_243_cov_0.858824_g65479_i0 | PRJNA781196 | 65856 | 243 | 0.858824 | 2.08694232 | Treponema saccharophilum | 165 | Bacteria | Bacteria | 93.5 | 1.29e-14 | NTclustered | gi|2581918939|dbj|AP025288.1| | 165 | g65479 | i0 | 89.189 | 5.73662551440329 | 74 | 8 | 30 | 0 | 19 | 92 | 373822 | 373749 | Treponema saccharophilum JCM 32279 DNA, complete genome | blastn | 1394 | 93.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema saccharophilum | ||
| 22888974 | 22888974 | PRJNA781196_P_NODE_52598_length_251_cov_1.719101_g52221_i0 | PRJNA781196 | 52598 | 251 | 1.719101 | 4.31494351 | root | 1 | Root_unresolved | Root_unresolved | 54.7 | 0.006 | NTclustered | gi|2620055352|gb|CP117021.1| | 159 | g52221 | i0 | 100 | 0.725099601593626 | 29 | 0 | 23 | 0 | 14 | 42 | 2342474 | 2342446 | Brachyspira hyodysenteriae strain ZH1179 chromosome, complete genome | blastn | 182 | 54.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira hyodysenteriae | ||
| 27401277 | 27401277 | PRJNA781196_P_NODE_28543_length_327_cov_0.921260_g28166_i0 | PRJNA781196 | 28543 | 327 | 0.92126 | 3.0125202 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 106 | 2.4199999999999998e-24 | NR | MDH5654478.1 | 2053615 | g28166 | i0 | 55.8 | 0.871559633027523 | 95 | 40 | 85.3 | 1 | 325 | 47 | 65 | 159 | MDH5654478.1 hypothetical protein [Spirochaetia bacterium] | diamond | 285 | 106 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 27558898 | 27558898 | PRJNA781196_P_NODE_66704_length_242_cov_0.923077_g66327_i0 | PRJNA781196 | 66704 | 242 | 0.923077 | 2.23384634 | uncultured spirochete | 156406 | Bacteria | Bacteria | 120 | 1.09e-31 | NR | SLM19634.1 | 156406 | g66327 | i0 | 80 | 0.991735537190083 | 80 | 16 | 99.2 | 0 | 240 | 1 | 115 | 194 | SLM19634.1 putative TPR repeat-containing protein [uncultured spirochete] | diamond | 240 | 120 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | uncultured spirochete | ||||
| 31927796 | 31927796 | PRJNA781196_P_NODE_56537_length_249_cov_0.886364_g56160_i0 | PRJNA781196 | 56537 | 249 | 0.886364 | 2.20704636 | Bacteria | 2 | Bacteria | Bacteria | 73.6 | 4.05e-13 | NR | OHD72849.1 | 1802194 | g56160 | i0 | 50 | 6.07228915662651 | 76 | 30 | 90.4 | 2 | 19 | 243 | 3 | 71 | OHD72849.1 MAG: alcohol dehydrogenase [Spirochaetes bacterium RBG_13_68_11] | diamond | 1512 | 74.3 | 0.990578734858681 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetes bacterium RBG_13_68_11 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;