RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA781196", tax_phylum = "Mycoplasmatota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781196 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8412267 8412267 PRJNA781196_P_NODE_27967_length_329_cov_2.800781_g27590_i0 PRJNA781196 27967 329 2.800781 9.21456949 Spiroplasma chrysopicola 216933 Bacteria Bacteria 62.1 5.14e-5   NTclustered gi|506965883|gb|CP005077.1| 1276227 g27590 i0 100 6.93009118541033 33 0 10 0 289 321 549607 549575 Spiroplasma chrysopicola DF-1, complete genome blastn 2280 62.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma chrysopicola
17788977 17788977 PRJNA781196_P_NODE_50274_length_253_cov_0.866667_g49897_i0 PRJNA781196 50274 253 0.866667 2.19266751 Mesomycoplasma 2923352 Bacteria Bacteria 466 6.9199999999999996e-127   NTclustered gi|150164|gb|M34956.1|MYCP115A 2100 g49897 i0 100 16.9209486166008 252 0 99 0 2 253 2362 2111 M.hyorhinis 115 kDa protein (p115) gene, complete cds blastn 4281 466 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;