RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA781196", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA781196 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10963429 10963429 PRJNA781196_P_NODE_39169_length_285_cov_2.575472_g38792_i0 PRJNA781196 39169 285 2.575472 7.3400952 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 228 4.0799999999999985e-55   NTclustered gi|2163362080|dbj|LC663516.1| 37360 g38792 i0 81.495 97.2280701754386 281 48 98 4 7 285 479 201 Plasmodiophora brassicae Yamguchi-Car act1 gene for actin 1, partial cds blastn 27710 228 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
10963758 10963758 PRJNA781196_P_NODE_59269_length_247_cov_0.896552_g58892_i0 PRJNA781196 59269 247 0.896552 2.21448344 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 89 2.08e-18   NR CEP00189.1 37360 g58892 i0 56 0.910931174089069 75 30 91.1 1 230 6 529 600 CEP00189.1 hypothetical protein PBRA_007923 [Plasmodiophora brassicae] diamond 225 89 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26768635 26768635 PRJNA781196_P_NODE_54921_length_250_cov_0.881356_g54544_i0 PRJNA781196 54921 250 0.881356 2.20339 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0223   NR CEO96208.1 37360 g54544 i0 55.6 0.432 36 16 43.2 0 124 17 27 62 CEO96208.1 hypothetical protein PBRA_004879 [Plasmodiophora brassicae] diamond 108 43.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28443324 28443324 PRJNA781196_P_NODE_58926_length_247_cov_0.896552_g58549_i0 PRJNA781196 58926 247 0.896552 2.21448344 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 89.7 1.02e-18   NR CEO96292.1 37360 g58549 i0 51.9 5.7085020242915 77 36 93.5 1 14 244 379 454 CEO96292.1 hypothetical protein PBRA_004963 [Plasmodiophora brassicae] diamond 1410 89.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29990363 29990363 PRJNA781196_P_NODE_37351_length_291_cov_1.431193_g36974_i0 PRJNA781196 37351 291 1.431193 4.16477163 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 73.2 1.09e-12   NR CEO98802.1 37360 g36974 i0 53.1 1.01030927835052 98 34 90.7 4 289 26 286 381 CEO98802.1 hypothetical protein PBRA_006916 [Plasmodiophora brassicae] diamond 294 73.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31190580 31190580 PRJNA781196_P_NODE_36715_length_293_cov_2.104545_g36338_i0 PRJNA781196 36715 293 2.104545 6.16631685 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 108 1.46e-28   NR CEO99235.1 37360 g36338 i0 61.4 0.849829351535836 83 32 85 0 268 20 1 83 CEO99235.1 hypothetical protein PBRA_001141 [Plasmodiophora brassicae] diamond 249 108 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;