RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA774958", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA774958 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29863828 29863828 PRJNA774958_P_NODE_38931_length_241_cov_0.916667_g38684_i0 PRJNA774958 38931 241 0.916667 2.20916747 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 45.1 0.00509   NR HUO83816.1 2651171 g38684 i0 33.8 0.95850622406639 77 47 94.6 2 3 230 24 97 HUO83816.1 translation elongation factor Ts [Thermoanaerobaculia bacterium] diamond 231 45.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
30053251 30053251 PRJNA774958_P_NODE_37291_length_244_cov_0.900585_g37044_i0 PRJNA774958 37291 244 0.900585 2.1974274 Acidobacteriota bacterium 1978231 Bacteria Bacteria 130 5.17e-33   NR MCH7667540.1 1978231 g37044 i0 85.9 0.959016393442623 78 11 95.9 0 235 2 2 79 MCH7667540.1 DEAD/DEAH box helicase [Acidobacteriota bacterium] diamond 234 130 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30464556 30464556 PRJNA774958_P_NODE_6033_length_668_cov_1.270588_g5810_i0 PRJNA774958 6033 668 1.270588 8.48752784 Acidobacteriota bacterium 1978231 Bacteria Bacteria 47.4 0.0173   NR PYX89186.1 1978231 g5810 i0 41.4 0.31437125748503 70 34 29.6 3 241 44 38 104 PYX89186.1 MAG: hypothetical protein DMG67_15610 [Acidobacteriota bacterium] diamond 210 47.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;