RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA774958", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA774958 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
752577 752577 PRJNA774958_P_NODE_18861_length_370_cov_1.400673_g18614_i0 PRJNA774958 18861 370 1.400673 5.1824901 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 96.7 2.02e-20   NR KAL3791924.1 29204 g18614 i0 61.5 15.4135135135135 78 28 61.6 1 66 293 159 236 KAL3791924.1 hypothetical protein HJC23_010784 [Cyclotella cryptica] diamond 5703 97.1 0.995880535530381 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
30284470 30284470 PRJNA774958_P_NODE_34092_length_250_cov_0.870056_g33845_i0 PRJNA774958 34092 250 0.870056 2.17514 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 91.3 3.34e-19   NR KAI2508315.1 210448 g33845 i0 52.5 10.536 80 38 96 0 6 245 304 383 KAI2508315.1 adaptin-like protein [Fragilaria crotonensis] diamond 2634 91.3 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
30874860 30874860 PRJNA774958_P_NODE_7934_length_584_cov_2.632094_g7700_i0 PRJNA774958 7934 584 2.632094 15.37142896 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 160 6.81e-42   NR XP_002179641.1 556484 g7700 i0 46.4 2.79452054794521 179 87 89.9 5 584 60 498 671 XP_002179641.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 1632 160 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;