RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA774958", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA774958 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9680959 9680959 PRJNA774958_P_NODE_1368_length_1268_cov_4.610879_g1254_i0 PRJNA774958 1368 1268 4.610879 58.46594572 root 1 Root_unresolved Root_unresolved 505 4.379999999999999e-174   NR MBL8900762.1 2026780 g1254 i0 58.5 10.8430599369085 414 170 97.5 1 1245 10 46 459 MBL8900762.1 adenosylhomocysteinase [Planctomycetota bacterium] diamond 13749 505 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30969819 30969819 PRJNA774958_P_NODE_22434_length_332_cov_2.621622_g22187_i0 PRJNA774958 22434 332 2.621622 8.70378504 Planctomycetota bacterium 2026780 Bacteria Bacteria 47.4 0.00216   NR MBM4009064.1 2026780 g22187 i0 40.9 0.795180722891566 44 23 37 1 52 174 135 178 MBM4009064.1 DMT family transporter [Planctomycetota bacterium] diamond 264 47.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;