RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA774958", tax_clade = "Opisthokonta" and tax_phylum = "Orthonectida"

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tax_superkingdom 1

tax_phylum 1

  • Orthonectida · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA774958 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10956894 10956894 PRJNA774958_P_NODE_39329_length_233_cov_2.268750_g39082_i0 PRJNA774958 39329 233 2.26875 5.2861875 root 1 Root_unresolved Root_unresolved 112 1.3600000000000002e-26   NR OAF67718.1 1819745 g39082 i0 80.6 18.9141630901288 62 12 79.8 0 232 47 672 733 OAF67718.1 hypothetical protein A3Q56_04471 [Intoshia linei] diamond 4407 112 1 Eukaryota Opisthokonta Metazoa Orthonectida     Rhopaluridae Intoshia Intoshia linei
28221808 28221808 PRJNA774958_P_NODE_34446_length_249_cov_0.875000_g34199_i0 PRJNA774958 34446 249 0.875 2.17875 Intoshia linei 1819745 Orthonectida other_Eukaryota 83.2 1.87e-16   NR OAF71759.1 1819745 g34199 i0 59.4 3.07228915662651 69 27 81.9 1 46 249 1 69 OAF71759.1 PRKCA-binding protein [Intoshia linei] diamond 765 83.2 1 Eukaryota Opisthokonta Metazoa Orthonectida     Rhopaluridae Intoshia Intoshia linei
29737294 29737294 PRJNA774958_P_NODE_3770_length_828_cov_3.834437_g3578_i0 PRJNA774958 3770 828 3.834437 31.74913836 Intoshia linei 1819745 Orthonectida other_Eukaryota 177 8.45e-51   NR OAF64067.1 1819745 g3578 i0 41.5 2.55434782608696 224 128 80.1 2 719 57 16 239 OAF64067.1 Transmembrane BAX inhibitor motif-containing protein 4 [Intoshia linei] diamond 2115 177 1 Eukaryota Opisthokonta Metazoa Orthonectida     Rhopaluridae Intoshia Intoshia linei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;