RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA773778" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA773778 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
750660 750660 PRJNA773778_S_NODE_10641_length_420_cov_1.331412_g10491_i0 PRJNA773778 10641 420 1.331412 5.5919304 Codium fragile 3133 Plants Plants 291 7.869999999999997e-74   NTclustered gi|1847694119|ref|NC_048526.1| 3133 g10491 i0 83.548 7.85714285714286 310 51 74 0 1 310 26423 26114 Codium fragile mitochondrion, complete genome blastn 3300 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium fragile
3302408 3302408 PRJNA773778_S_NODE_38823_length_255_cov_1.016484_g38673_i0 PRJNA773778 38823 255 1.016484 2.5920342 Codium fragile 3133 Plants Plants 388 1.5499999999999998e-103   NTclustered gi|1792260574|gb|MN853876.1| 3133 g38673 i0 94.444 1.98823529411765 252 14 99 0 4 255 35287 35036 Codium fragile chloroplast, complete genome blastn 507 388 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium fragile
5855140 5855140 PRJNA773778_S_NODE_49145_length_235_cov_2.296296_g48995_i0 PRJNA773778 49145 235 2.296296 5.3962956 Codium fragile 3133 Plants Plants 180 9.26e-41   NTclustered gi|1847694119|ref|NC_048526.1| 3133 g48995 i0 80.87 3.34893617021277 230 43 98 1 5 234 35103 34875 Codium fragile mitochondrion, complete genome blastn 787 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Codiaceae Codium Codium fragile
10135833 10135833 PRJNA773778_S_NODE_14688_length_371_cov_0.912752_g14538_i0 PRJNA773778 14688 371 0.912752 3.38630992 root 1 Root_unresolved Root_unresolved 664 0   NTclustered gi|194338441|gb|EU851965.1| 38833 g14538 i0 98.922 113.811320754717 371 4 100 0 1 371 655 285 Micromonas pusilla strain RCC434 photosystem II protein D1 (psbA) gene, partial cds; chloroplast blastn 42224 664 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
19877802 19877802 PRJNA773778_S_NODE_25396_length_301_cov_3.118421_g25246_i0 PRJNA773778 25396 301 3.118421 9.38644721 Koliella longiseta 33092 Plants Plants 446 1.0999999999999995e-120   NTclustered gi|371782094|emb|HE610126.1| 33092 g25246 i0 93.355 100.305647840532 301 20 100 0 1 301 4649 4949 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 30192 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
31127194 31127194 PRJNA773778_S_NODE_12295_length_397_cov_4.975309_g12145_i0 PRJNA773778 12295 397 4.975309 19.75197673 Cymbomonas tetramitiformis 36881 Plants Plants 60.5 3.97e-8   NR KAK3236989.1 36881 g12145 i0 35.4 0.619647355163728 82 53 62 0 3 248 116 197 KAK3236989.1 hypothetical protein CYMTET_52902 [Cymbomonas tetramitiformis] diamond 246 60.5 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
31412218 31412218 PRJNA773778_S_NODE_9596_length_437_cov_3.859890_g9446_i0 PRJNA773778 9596 437 3.85989 16.8677193 Sanguina aurantia 2578422 Plants Plants 67.4 7.83e-10   NR MEW5310664.1 2578422 g9446 i0 56.3 0.638443935926774 48 21 33 0 435 292 1106 1153 MEW5310664.1 hypothetical protein [Sanguina aurantia] diamond 279 67.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia
31760057 31760057 PRJNA773778_S_NODE_27757_length_291_cov_8.788991_g27607_i0 PRJNA773778 27757 291 8.788991 25.57596381 Micromonas pusilla CCMP1545 564608 Plants Plants 45.8 0.00504   NR XP_003063541.1 564608 g27607 i0 51.4 0.360824742268041 35 17 36.1 0 286 182 333 367 XP_003063541.1 uncharacterized protein MICPUCDRAFT_48890 [Micromonas pusilla CCMP1545] diamond 105 45.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
32780873 32780873 PRJNA773778_S_NODE_21520_length_320_cov_5.959514_g21370_i0 PRJNA773778 21520 320 5.959514 19.0704448 Viridiplantae 33090 Plants Plants 75.9 1.19e-14   NR QDZ24001.1 1764295 g21370 i0 60.3 1.790625 63 25 59.1 0 320 132 92 154 QDZ24001.1 N-acetyltransferase [Chloropicon primus] diamond 573 76.6 0.990861618798956 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon primus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;