RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA773778", tax_kingdom = "Thermotogati" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 9 ✖

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA773778 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2027424 2027424 PRJNA773778_S_NODE_45682_length_244_cov_1.333333_g45532_i0 PRJNA773778 45682 244 1.333333 3.25333252 Thermus thermophilus 274 Bacteria Bacteria 370 5.35e-98   NTclustered gi|2074864999|dbj|AP024934.1| 274 g45532 i0 99.029 33.7704918032787 206 2 84 0 39 244 179160 178955 Thermus thermophilus AA3-7 plasmid pAA3-7b DNA, complete sequence blastn 8240 370 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
5854344 5854344 PRJNA773778_S_NODE_15365_length_364_cov_3.432990_g15215_i0 PRJNA773778 15365 364 3.43299 12.4960836 Deinococcus wulumuqiensis 980427 Bacteria Bacteria 588 2.13e-163   NTclustered gi|1819261009|gb|CP049357.1| 1288484 g15215 i0 98.507 20.282967032967 335 2 91 1 33 364 2423940 2423606 Deinococcus wulumuqiensis R12 chromosome, complete genome blastn 7383 588 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
6311339 6311339 PRJNA773778_S_NODE_35945_length_263_cov_1.600000_g35795_i0 PRJNA773778 35945 263 1.6 4.208 Bacteria 2 Bacteria Bacteria 379 9.7e-101   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g35795 i0 97.727 55.2927756653992 220 5 84 0 20 239 340 121 Thermus aquaticus DNA polymerase (PolI) gene blastn 14542 379 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
8860401 8860401 PRJNA773778_S_NODE_14807_length_369_cov_7.320946_g14657_i0 PRJNA773778 14807 369 7.320946 27.01429074 Truepera 332248 Bacteria Bacteria 313 1.46e-80   NTclustered gi|2573973991|gb|CP133611.1| 332249 g14657 i0 92.627 447.715447154472 217 16 59 0 2 218 762032 762248 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 165207 316 0.990506329113924 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
10135995 10135995 PRJNA773778_S_NODE_6328_length_509_cov_9.594037_g6178_i0 PRJNA773778 6328 509 9.594037 48.83364833 Thermus 270 Bacteria Bacteria 811 0   NTclustered gi|320149275|gb|CP001962.1| 743525 g6178 i0 99.551 6.93123772102161 445 2 87 0 65 509 1901424 1901868 Thermus scotoductus SA-01, complete genome blastn 3528 811 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
16054091 16054091 PRJNA773778_S_NODE_48293_length_241_cov_0.916667_g48143_i0 PRJNA773778 48293 241 0.916667 2.20916747 Deinococcus ficus 317577 Bacteria Bacteria 355 1.48e-93   NTclustered gi|1220362168|gb|CP021081.1| 317577 g48143 i0 99.487 20.7759336099585 195 1 81 0 47 241 484464 484270 Deinococcus ficus strain CC-FR2-10, complete genome blastn 5007 355 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
21609499 21609499 PRJNA773778_S_NODE_49417_length_230_cov_3.745223_g49267_i0 PRJNA773778 49417 230 3.745223 8.6140129 Deinococcus 1298 Bacteria Bacteria 366 6.46e-97   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g49267 i0 100 4.28260869565217 198 0 86 0 1 198 1831932 1832129 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 985 366 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
24159022 24159022 PRJNA773778_S_NODE_8519_length_457_cov_5.213542_g8369_i0 PRJNA773778 8519 457 5.213542 23.82588694 Thermus 270 Bacteria Bacteria 819 0   NTclustered gi|2894814231|gb|CP178485.1| 56957 g8369 i0 98.911 41.0678336980306 459 3 100 1 1 457 50213 49755 Thermus oshimai strain Blanco chromosome, complete genome blastn 18768 824 0.993932038834951 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai
28199661 28199661 PRJNA773778_S_NODE_38566_length_255_cov_2.115385_g38416_i0 PRJNA773778 38566 255 2.115385 5.39423175 Bacteria 2 Bacteria Bacteria 78.2 7.72e-15   NR WP_188974405.1 522487 g38416 i0 48.2 9.68235294117647 85 42 100 1 1 255 147 229 WP_188974405.1 ice-binding family protein [Deinococcus aerolatus] diamond 2469 78.6 0.994910941475827 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aerolatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;