RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA773778", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA773778 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10954892 10954892 PRJNA773778_S_NODE_14309_length_374_cov_8.219269_g14159_i0 PRJNA773778 14309 374 8.219269 30.74006606 Labilithrix luteola 1391654 Bacteria Bacteria 307 6.88e-79   NTclustered gi|913610804|gb|CP012333.1| 1391654 g14159 i0 85.312 3.11764705882353 320 21 85 13 3 320 186854 187149 Labilithrix luteola strain DSM 27648, complete genome blastn 1166 307 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
27811682 27811682 PRJNA773778_S_NODE_10064_length_429_cov_7.522472_g9914_i0 PRJNA773778 10064 429 7.522472 32.27140488 Sorangium cellulosum 56 Bacteria Bacteria 66.2 4.21e-11   NR WP_061611783.1 56 g9914 i0 40.3 1.07692307692308 77 44 52.4 1 40 264 3 79 WP_061611783.1 RNA recognition motif domain-containing protein, partial [Sorangium cellulosum] diamond 462 66.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;