RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA773778", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA773778 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17329946 17329946 PRJNA773778_S_NODE_9174_length_445_cov_5.077957_g9024_i0 PRJNA773778 9174 445 5.077957 22.59690865 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 87.8 5.38e-19   NR MEQ1723851.1 2862747 g9024 i0 65 0.539325842696629 80 27 53.3 1 261 25 1 80 MEQ1723851.1 hypothetical protein [Pseudobdellovibrio sp.] diamond 240 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
29715083 29715083 PRJNA773778_S_NODE_30290_length_282_cov_1.105263_g30140_i0 PRJNA773778 30290 282 1.105263 3.11684166 Pseudomonadati 3379134 Bacteria Bacteria 137 5.37e-36   NR WP_102243011.1 960 g30140 i0 62 7.84042553191489 92 35 97.9 0 278 3 321 412 WP_102243011.1 SDR family NAD(P)-dependent oxidoreductase [Bacteriovorax stolpii] diamond 2211 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;