RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA773778", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA773778 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5854520 5854520 PRJNA773778_S_NODE_23245_length_311_cov_3.235294_g23095_i0 PRJNA773778 23245 311 3.235294 10.06176434 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 171 7.69e-38   NTclustered gi|675198636|ref|XM_008909955.1| 761204 g23095 i0 83.422 1.30546623794212 187 28 59 3 127 311 390 205 Phytophthora parasitica INRA-310 60S ribosomal protein L38 mRNA blastn 406 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
7130311 7130311 PRJNA773778_S_NODE_6706_length_498_cov_10.748235_g6556_i0 PRJNA773778 6706 498 10.748235 53.5262103 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 267 1.6e-66   NTclustered gi|695434305|ref|XM_009533098.1| 67593 g6556 i0 84.249 64.64859437751 273 43 55 0 217 489 1418 1146 Phytophthora sojae hypothetical protein partial mRNA blastn 32195 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20333690 20333690 PRJNA773778_S_NODE_2356_length_706_cov_6.533965_g2218_i0 PRJNA773778 2356 706 6.533965 46.1297929 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 91.6 1.49e-13   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g2218 i0 87.5 10.8796033994334 80 8 11 2 180 258 12279 12201 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 7681 91.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
29147458 29147458 PRJNA773778_S_NODE_14809_length_369_cov_6.449324_g14659_i0 PRJNA773778 14809 369 6.449324 23.79800556 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 84.7 3.23e-16   NR DAZ93893.1 4803 g14659 i0 56 1.42276422764228 84 36 67.5 1 25 273 908 991 DAZ93893.1 TPA: hypothetical protein N0F65_004740 [Lagenidium giganteum] diamond 525 84.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;