RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA773778", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA773778 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14779631 14779631 PRJNA773778_S_NODE_17552_length_345_cov_4.529412_g17402_i0 PRJNA773778 17552 345 4.529412 15.6264714 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 160 6.229999999999999e-45   NR WP_093287198.1 1882831 g17402 i0 80.6 0.808695652173913 93 18 80.9 0 344 66 342 434 WP_093287198.1 adenosylhomocysteinase [Verrucomicrobium sp. GAS474] diamond 279 160 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
27811684 27811684 PRJNA773778_S_NODE_36164_length_262_cov_6.613757_g36014_i0 PRJNA773778 36164 262 6.613757 17.32804334 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 57.8 1.22e-8   NR RYD84282.1 2026800 g36014 i0 48.5 0.755725190839695 66 34 75.6 0 44 241 1 66 RYD84282.1 MAG: hypothetical protein EOP84_05925, partial [Verrucomicrobiaceae bacterium] diamond 198 57.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;