RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA773778", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA773778 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28411495 28411495 PRJNA773778_S_NODE_43986_length_246_cov_1.335260_g43836_i0 PRJNA773778 43986 246 1.33526 3.2847396 Candidatus Protochlamydia amoebophila 362787 Bacteria Bacteria 44.3 6.86e-4   NR MBS4163025.1 362787 g43836 i0 60 0.426829268292683 35 14 42.7 0 195 91 6 40 MBS4163025.1 hypothetical protein [Candidatus Protochlamydia amoebophila] diamond 105 44.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
30495820 30495820 PRJNA773778_S_NODE_44553_length_246_cov_0.867052_g44403_i0 PRJNA773778 44553 246 0.867052 2.13294792 Chlamydia psittaci 83554 Bacteria Bacteria 62.4 5.93e-11   NR EPJ19409.1 1112257 g44403 i0 66.7 0.548780487804878 45 15 54.9 0 42 176 5 49 EPJ19409.1 hypothetical protein CP02DC21_1087, partial [Chlamydia psittaci 02DC21] diamond 135 62.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
32434324 32434324 PRJNA773778_S_NODE_47379_length_242_cov_1.005917_g47229_i0 PRJNA773778 47379 242 1.005917 2.43431914 Chlamydia 810 Bacteria Bacteria 70.5 3.63e-14   NR EPJ19409.1 1112257 g47229 i0 75 1.06611570247934 44 11 54.5 0 180 49 7 50 EPJ19409.1 hypothetical protein CP02DC21_1087, partial [Chlamydia psittaci 02DC21] diamond 258 71.2 0.990168539325843 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;