RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA773778", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA773778 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26904744 26904744 PRJNA773778_S_NODE_12541_length_394_cov_7.439252_g12391_i0 PRJNA773778 12541 394 7.439252 29.31065288 Boothiomyces 451452 Fungi Fungi 55.5 3.15e-6   NR KAJ3258055.1 261099 g12391 i0 42 2.64213197969543 69 39 51.8 1 1 204 109 177 KAJ3258055.1 hypothetical protein HK103_004048 [Boothiomyces macroporosus] diamond 1041 55.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Terramycetaceae Boothiomyces Boothiomyces macroporosus
27369747 27369747 PRJNA773778_S_NODE_36503_length_261_cov_3.515957_g36353_i0 PRJNA773778 36503 261 3.5159570000000002 9.17664777 Borealophlyctis nickersoniae 2735257 Fungi Fungi 58.5 1.28e-7   NR KAJ3282573.1 2735257 g36353 i0 45.3 0.609195402298851 53 29 60.9 0 39 197 214 266 KAJ3282573.1 hypothetical protein HK104_010827, partial [Borealophlyctis nickersoniae] diamond 159 58.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Borealophlyctidaceae Borealophlyctis Borealophlyctis nickersoniae
30716752 30716752 PRJNA773778_S_NODE_26354_length_297_cov_5.053571_g26204_i0 PRJNA773778 26354 297 5.053571 15.00910587 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 102 2.0899999999999994e-23   NR KAH9252968.1 1357716 g26204 i0 74.6 0.676767676767677 67 12 62.6 1 1 186 327 393 KAH9252968.1 hypothetical protein BASA81_009124 [Batrachochytrium salamandrivorans] diamond 201 102 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;