RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA773778" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJNA773778 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16053761 16053761 PRJNA773778_S_NODE_35933_length_263_cov_1.621053_g35783_i0 PRJNA773778 35933 263 1.621053 4.26336939 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g35783 i0 100 0.551330798479088 30 0 11 0 234 263 103 74 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
23703949 23703949 PRJNA773778_S_NODE_26839_length_295_cov_2.252252_g26689_i0 PRJNA773778 26839 295 2.252252 6.6441434 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 58.4 5.88e-4   NTclustered gi|2733867141|gb|PP812520.1| 440571 g26689 i0 97.059 0.51864406779661 34 1 12 0 1 34 74 107 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 153 58.4 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae
23704146 23704146 PRJNA773778_S_NODE_34939_length_266_cov_1.595855_g34789_i0 PRJNA773778 34939 266 1.595855 4.2449743 uncultured Collodictyonidae 440571 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|2733867141|gb|PP812520.1| 440571 g34789 i0 100 0.545112781954887 30 0 11 0 237 266 103 74 Uncultured Collodictyonidae isolate Col19 small subunit ribosomal RNA gene and internal transcribed spacer region, partial sequence blastn 145 56.5 1 Eukaryota CRuMs         Collodictyonidae   uncultured Collodictyonidae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;