RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA773778" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA773778 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24977599 24977599 PRJNA773778_S_NODE_23860_length_308_cov_2.051064_g23710_i0 PRJNA773778 23860 308 2.051064 6.31727712 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 224 5.759999999999999e-54   NTclustered gi|300078498|gb|GU001160.1| 5755 g23710 i0 88.205 18.8279220779221 195 14 63 6 1 195 5553 5738 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5799 224 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28474571 28474571 PRJNA773778_S_NODE_7226_length_485_cov_2.077670_g7076_i0 PRJNA773778 7226 485 2.07767 10.0766995 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 48.9 0.00131   NR PRP76637.1 1890364 g7076 i0 30.2 0.717525773195876 116 59 71.8 4 485 138 77 170 PRP76637.1 hypothetical protein PROFUN_14922 [Planoprotostelium fungivorum] diamond 348 48.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30306598 30306598 PRJNA773778_S_NODE_8152_length_464_cov_14.332481_g8002_i0 PRJNA773778 8152 464 14.332481 66.50271184 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 90.5 9.2e-18   NR KYQ88194.1 361077 g8002 i0 38.9 4.41594827586207 113 67 72.4 2 439 104 1008 1119 KYQ88194.1 hypothetical protein DLAC_10880 [Tieghemostelium lacteum] diamond 2049 90.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;