RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA773625" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA773625 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1207122 1207122 PRJNA773625_P_NODE_7481_length_169_cov_0.866667_g7466_i0 PRJNA773625 7481 169 0.866667 1.46466723 Mycobacterium 1763 Bacteria Bacteria 202 1.32e-47   NTclustered gi|1198028085|gb|CP020810.1| 482462 g7466 i0 88.166 4.69822485207101 169 20 100 0 1 169 24507 24675 Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence blastn 794 202 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium dioxanotrophicus
2482557 2482557 PRJNA773625_P_NODE_11082_length_162_cov_0.920354_g11067_i0 PRJNA773625 11082 162 0.920354 1.49097348 Cutibacterium 1912216 Bacteria Bacteria 300 4.36e-77   NTclustered gi|1446500593|gb|CP031442.1| 1747 g11067 i0 100 54.2222222222222 162 0 100 0 1 162 1252105 1251944 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 8784 300 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
5035498 5035498 PRJNA773625_P_NODE_4224_length_210_cov_1.291925_g4209_i0 PRJNA773625 4224 210 1.291925 2.7130425 Cutibacterium 1912216 Bacteria Bacteria 388 1.24e-103   NTclustered gi|1446500593|gb|CP031442.1| 1747 g4209 i0 100 52.9666666666667 210 0 100 0 1 210 1263465 1263256 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 11123 388 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
6311171 6311171 PRJNA773625_P_NODE_7765_length_168_cov_0.873950_g7750_i0 PRJNA773625 7765 168 0.87395 1.468236 Cutibacterium 1912216 Bacteria Bacteria 311 2.11e-80   NTclustered gi|1446500593|gb|CP031442.1| 1747 g7750 i0 100 51.9761904761905 168 0 100 0 1 168 1512352 1512185 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 8732 311 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
7585216 7585216 PRJNA773625_P_NODE_10566_length_163_cov_0.912281_g10551_i0 PRJNA773625 10566 163 0.912281 1.48701803 Cutibacterium 1912216 Bacteria Bacteria 302 1.22e-77   NTclustered gi|1755605466|dbj|AP019664.1| 1747 g10551 i0 100 85.9877300613497 163 0 100 0 1 163 538283 538445 Cutibacterium acnes TP-CU389 DNA, complete genome blastn 14016 302 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
8860358 8860358 PRJNA773625_P_NODE_8507_length_167_cov_0.881356_g8492_i0 PRJNA773625 8507 167 0.881356 1.47186452 Cutibacterium 1912216 Bacteria Bacteria 309 7.53e-80   NTclustered gi|1446500593|gb|CP031442.1| 1747 g8492 i0 100 83.1556886227545 167 0 100 0 1 167 2109626 2109460 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 13887 309 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
9677819 9677819 PRJNA773625_P_NODE_8648_length_166_cov_0.888889_g8633_i0 PRJNA773625 8648 166 0.888889 1.47555574 Corynebacterium accolens 38284 Bacteria Bacteria 307 2.69e-79   NTclustered gi|2550484788|gb|CP100380.1| 38284 g8633 i0 100 31.0060240963855 166 0 100 0 1 166 2125388 2125223 Corynebacterium accolens strain CA3 chromosome blastn 5147 307 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens
11410995 11410995 PRJNA773625_P_NODE_8849_length_166_cov_0.888889_g8834_i0 PRJNA773625 8849 166 0.888889 1.47555574 Cutibacterium 1912216 Bacteria Bacteria 307 2.69e-79   NTclustered gi|966542502|gb|CP012354.1| 1747 g8834 i0 100 53 166 0 100 0 1 166 1077994 1077829 Cutibacterium acnes strain PA_12_1_L1 chromosome, complete genome blastn 8798 307 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
12686760 12686760 PRJNA773625_P_NODE_10610_length_163_cov_0.912281_g10595_i0 PRJNA773625 10610 163 0.912281 1.48701803 Cutibacterium 1912216 Bacteria Bacteria 302 1.22e-77   NTclustered gi|1446500593|gb|CP031442.1| 1747 g10595 i0 100 57.4846625766871 163 0 100 0 1 163 1071213 1071375 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 9370 302 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
13961095 13961095 PRJNA773625_P_NODE_10811_length_162_cov_0.920354_g10796_i0 PRJNA773625 10811 162 0.920354 1.49097348 Cutibacterium 1912216 Bacteria Bacteria 300 4.36e-77   NTclustered gi|1446500593|gb|CP031442.1| 1747 g10796 i0 100 53.9876543209877 162 0 100 0 1 162 2114726 2114887 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 8746 300 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
15235630 15235630 PRJNA773625_P_NODE_7912_length_168_cov_0.873950_g7897_i0 PRJNA773625 7912 168 0.87395 1.468236 Cutibacterium 1912216 Bacteria Bacteria 311 2.11e-80   NTclustered gi|1446500593|gb|CP031442.1| 1747 g7897 i0 100 12 168 0 100 0 1 168 637857 638024 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 2016 311 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
15235631 15235631 PRJNA773625_P_NODE_7932_length_168_cov_0.873950_g7917_i0 PRJNA773625 7932 168 0.87395 1.468236 Cutibacterium 1912216 Bacteria Bacteria 311 2.11e-80   NTclustered gi|1446500593|gb|CP031442.1| 1747 g7917 i0 100 67.5357142857143 168 0 100 0 1 168 1657754 1657921 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 11346 311 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
17327555 17327555 PRJNA773625_P_NODE_10794_length_162_cov_0.920354_g10779_i0 PRJNA773625 10794 162 0.920354 1.49097348 Dermacoccus nishinomiyaensis 1274 Bacteria Bacteria 300 4.36e-77   NTclustered gi|2700497357|gb|CP147844.1| 1274 g10779 i0 100 3 162 0 100 0 1 162 2357897 2357736 Dermacoccus nishinomiyaensis strain GlSt318 chromosome, complete genome blastn 486 300 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus nishinomiyaensis
17327569 17327569 PRJNA773625_P_NODE_11134_length_162_cov_0.920354_g11119_i0 PRJNA773625 11134 162 0.920354 1.49097348 Corynebacterium tuberculostearicum 38304 Bacteria Bacteria 300 4.36e-77   NTclustered gi|2547420364|gb|CP073093.1| 38304 g11119 i0 100 76.3395061728395 162 0 100 0 1 162 1240357 1240518 Corynebacterium tuberculostearicum strain CTNIH12 chromosome, complete genome blastn 12367 300 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
22426687 22426687 PRJNA773625_P_NODE_7898_length_168_cov_0.873950_g7883_i0 PRJNA773625 7898 168 0.87395 1.468236 Corynebacterium accolens 38284 Bacteria Bacteria 233 4.7e-57   NTclustered gi|2550484788|gb|CP100380.1| 38284 g7883 i0 91.667 25.0595238095238 168 14 100 0 1 168 2017174 2017007 Corynebacterium accolens strain CA3 chromosome blastn 4210 233 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens
29968129 29968129 PRJNA773625_P_NODE_8511_length_167_cov_0.881356_g8496_i0 PRJNA773625 8511 167 0.881356 1.47186452 Promicromonospora 43676 Bacteria Bacteria 46.2 3.87e-4   NR WP_182615028.1 88382 g8496 i0 74.1 0.970059880239521 27 7 48.5 0 85 165 1 27 WP_182615028.1 Lrp/AsnC family transcriptional regulator [Promicromonospora sukumoe] diamond 162 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Promicromonospora Promicromonospora sukumoe

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;