RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA773247", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA773247 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26745957 26745957 PRJNA773247_P_NODE_35141_length_240_cov_2.467066_g35057_i0 PRJNA773247 35141 240 2.467066 5.9209584 root 1 Root_unresolved Root_unresolved 86.3 2.01e-19   NR WP_415953032.1 190976 g35057 i0 57.7 3.725 71 30 88.8 0 27 239 51 121 WP_415953032.1 NADAR family protein [Methanobrevibacter woesei] diamond 894 87 0.991954022988506 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter woesei
29968122 29968122 PRJNA773247_P_NODE_14571_length_391_cov_3.814465_g14487_i0 PRJNA773247 14571 391 3.814465 14.91455815 Methanomada group 2283794 Archaea Archaea 72 2.66e-13   NR WP_011019965.1 2320 g14487 i0 50 1.08951406649616 72 36 55.2 0 342 127 43 114 WP_011019965.1 peptidyl-tRNA hydrolase Pth2 [Methanopyrus kandleri] diamond 426 72 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;