RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA773247", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA773247 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19875749 19875749 PRJNA773247_P_NODE_36416_length_228_cov_2.258065_g36332_i0 PRJNA773247 36416 228 2.258065 5.1483882 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 54.7 0.006   NTclustered gi|551553316|ref|XM_005763909.1| 280463 g36332 i0 100 0.12719298245614 29 0 13 0 175 203 1012 1040 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
26958210 26958210 PRJNA773247_P_NODE_30042_length_251_cov_5.601124_g29958_i0 PRJNA773247 30042 251 5.601124 14.05882124 Prymnesium parvum 97485 Haptophyta other_Eukaryota 48.5 3.34e-4   NR KAL1518926.1 97485 g29958 i0 38.3 1.9003984063745 81 45 90.8 2 230 3 136 216 KAL1518926.1 hypothetical protein AB1Y20_003198 [Prymnesium parvum] diamond 477 48.5 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
32424545 32424545 PRJNA773247_P_NODE_5639_length_735_cov_12.709970_g5560_i0 PRJNA773247 5639 735 12.70997 93.4182795 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 465 2.1099999999999993e-161   NR KOO24041.1 1460289 g5560 i0 95.8 0.979591836734694 240 10 98 0 724 5 113 352 KOO24041.1 major facilitator superfamily permease [Chrysochromulina tobinii] diamond 720 465 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;