RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA772154" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA772154 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5035168 5035168 PRJNA772154_P_NODE_20664_length_246_cov_1.352601_g20479_i0 PRJNA772154 20664 246 1.352601 3.32739846 Metazoa 33208 Mollusca Mollusca 451 1.87e-122   NTclustered gi|1928112764|gb|MT947788.1| 6523 g20479 i0 100 98.9105691056911 244 0 99 0 3 246 882 1125 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 24332 451 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
9675895 9675895 PRJNA772154_P_NODE_22088_length_243_cov_1.376471_g21903_i0 PRJNA772154 22088 243 1.376471 3.34482453 Bradybaena similaris 145626 Mollusca Mollusca 62.1 3.64e-5   NTclustered gi|2912994531|dbj|AP039599.1| 145626 g21903 i0 100 8.33744855967078 33 0 14 0 54 86 55053995 55053963 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 18, sequence blastn 2026 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
27874529 27874529 PRJNA772154_P_NODE_13325_length_301_cov_3.342105_g13140_i0 PRJNA772154 13325 301 3.342105 10.05973605 Solemya velum 13268 Mollusca Mollusca 88.2 8.16e-18   NR KAL5010109.1 13268 g13140 i0 54.1 3.89700996677741 98 45 97.7 0 296 3 843 940 KAL5010109.1 hypothetical protein ScPMuIL_012414 [Solemya velum] diamond 1173 89 0.991011235955056 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Solemyida Solemyidae Solemya Solemya velum
29263633 29263633 PRJNA772154_P_NODE_22969_length_239_cov_2.674699_g22784_i0 PRJNA772154 22969 239 2.674699 6.39253061 Mizuhopecten yessoensis 6573 Mollusca Mollusca 69.7 4.15e-13   NR XP_021357848.1 6573 g22784 i0 50 6.77824267782427 68 34 85.4 0 204 1 26 93 XP_021357848.1 cystatin-B-like [Mizuhopecten yessoensis] diamond 1620 69.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;