RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA772154", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA772154 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29295382 29295382 PRJNA772154_P_NODE_17809_length_253_cov_0.866667_g17624_i0 PRJNA772154 17809 253 0.866667 2.19266751 Cyclotella atomus 382360 SAR_Eukaryotes SAR_Eukaryotes 56.6 5.43e-7   NR KAL3792100.1 382360 g17624 i0 68.4 0.450592885375494 38 12 45.1 0 129 16 447 484 KAL3792100.1 hypothetical protein ACHAWO_010041 [Cyclotella atomus] diamond 114 56.6 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus
32740184 32740184 PRJNA772154_P_NODE_19380_length_249_cov_0.886364_g19195_i0 PRJNA772154 19380 249 0.886364 2.20704636 Cyclotella atomus 382360 SAR_Eukaryotes SAR_Eukaryotes 161 9.46e-44   NR KAL3768570.1 382360 g19195 i0 88 1 83 9 100 1 1 249 1187 1268 KAL3768570.1 hypothetical protein ACHAWO_001519 [Cyclotella atomus] diamond 249 161 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;