RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA772154", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA772154 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14776204 14776204 PRJNA772154_P_NODE_17632_length_253_cov_0.866667_g17447_i0 PRJNA772154 17632 253 0.866667 2.19266751 Victivallales bacterium 2212475 Bacteria Bacteria 126 3.0599999999999997e-35   NR MBT7299322.1 2212475 g17447 i0 71.4 0.99604743083004 84 24 99.6 0 1 252 19 102 MBT7299322.1 hypothetical protein [Victivallales bacterium] diamond 252 126 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
26641726 26641726 PRJNA772154_P_NODE_22501_length_242_cov_1.840237_g22316_i0 PRJNA772154 22501 242 1.840237 4.45337354 Lentisphaerota bacterium 1932692 Bacteria Bacteria 42.7 0.0367   NR RMD78872.1 1932692 g22316 i0 35.5 0.768595041322314 62 30 66.9 3 80 241 164 223 RMD78872.1 MAG: hypothetical protein D6820_09170 [Lentisphaerota bacterium] diamond 186 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32519653 32519653 PRJNA772154_P_NODE_21059_length_246_cov_0.884393_g20874_i0 PRJNA772154 21059 246 0.884393 2.17560678 Lentisphaerae bacterium RIFOXYA12_64_32 1798577 Bacteria Bacteria 80.9 1.24e-15   NR OGV67774.1 1798577 g20874 i0 80.9 2.29268292682927 47 9 57.3 0 142 2 177 223 OGV67774.1 MAG: hypothetical protein A3K18_28450 [Lentisphaerae bacterium RIFOXYA12_64_32] diamond 564 80.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYA12_64_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;