RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA771359" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA771359 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12226731 12226731 PRJNA771359_S_NODE_2290_length_222_cov_1.443243_g2207_i0 PRJNA771359 2290 222 1.443243 3.20399946 Mus musculus 10090 Chordata Chordata 355 1.34e-93   NTclustered gi|2904935163|gb|PQ738086.1| 10090 g2207 i0 95.536 102.90990990991 224 7 100 3 1 222 108 330 Mus musculus lncRNA, complete sequence blastn 22846 355 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13500814 13500814 PRJNA771359_S_NODE_5151_length_151_cov_2.008772_g5068_i0 PRJNA771359 5151 151 2.008772 3.03324572 Cuculus canorus 55661 Chordata Chordata 56.5 0.001   NTclustered gi|2452585706|ref|XM_054063658.1| 55661 g5068 i0 100 0.615894039735099 30 0 20 0 116 145 1598 1569 PREDICTED: Cuculus canorus family with sequence similarity 98 member A (FAM98A), mRNA blastn 93 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Cuculidae Cuculus Cuculus canorus
19873814 19873814 PRJNA771359_S_NODE_2876_length_197_cov_7.150000_g2793_i0 PRJNA771359 2876 197 7.15 14.0855 Hyla sarda 327740 Chordata Chordata 56.5 0.001   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g2793 i0 100 2.89340101522843 30 0 15 0 1 30 3949 3978 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 570 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
28642041 28642041 PRJNA771359_S_NODE_5207_length_150_cov_4.061947_g5124_i0 PRJNA771359 5207 150 4.061947 6.0929205 Metazoa 33208 Chordata Chordata 70.5 6.97e-13   NR XP_059832360.1 79690 g5124 i0 91.9 62.68 37 3 74 0 148 38 220 256 XP_059832360.1 large ribosomal subunit protein uL15-like [Hypanus sabinus] diamond 9402 71.2 0.990168539325843 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
29421492 29421492 PRJNA771359_S_NODE_5089_length_152_cov_1.313043_g5006_i0 PRJNA771359 5089 152 1.313043 1.99582536 Elgaria multicarinata webbii 159646 Chordata Chordata 63.2 3.68e-10   NR XP_062995840.1 159646 g5006 i0 78.9 3.49342105263158 38 8 75 0 150 37 184 221 XP_062995840.1 ras-related protein ORAB-1-like [Elgaria multicarinata webbii] diamond 531 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Anguidae Elgaria Elgaria multicarinata
29778475 29778475 PRJNA771359_S_NODE_1991_length_235_cov_1.742424_g1908_i0 PRJNA771359 1991 235 1.742424 4.0946964 Metazoa 33208 Chordata Chordata 52.4 1.1e-6   NR CAH1263557.1 7740 g1908 i0 38.5 1.97872340425532 65 36 83 2 41 235 11 71 CAH1263557.1 Hypp2729 [Branchiostoma lanceolatum] diamond 465 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32614089 32614089 PRJNA771359_S_NODE_4860_length_155_cov_1.601695_g4777_i0 PRJNA771359 4860 155 1.601695 2.48262725 Tinamus guttatus 94827 Chordata Chordata 63.9 3.71e-10   NR XP_010213719.1 94827 g4777 i0 56 3.85161290322581 50 22 96.8 0 152 3 98 147 XP_010213719.1 PREDICTED: V-type proton ATPase catalytic subunit A-like, partial [Tinamus guttatus] diamond 597 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Tinamus Tinamus guttatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;