RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA771359", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA771359 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24158406 24158406 PRJNA771359_S_NODE_3439_length_181_cov_1.861111_g3356_i0 PRJNA771359 3439 181 1.861111 3.36861091 Metazoa 33208 Nematoda Nematoda 95.9 4.37e-22   NR KHJ48313.1 68888 g3356 i0 79.7 6.87845303867403 59 12 97.8 0 178 2 57 115 KHJ48313.1 ribosomal protein S2 [Trichuris suis] diamond 1245 95.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
27558634 27558634 PRJNA771359_S_NODE_4404_length_161_cov_2.782258_g4321_i0 PRJNA771359 4404 161 2.782258 4.47943538 Strongyloides ratti 34506 Nematoda Nematoda 44.3 6.7e-4   NR XP_024500773.1 34506 g4321 i0 64.3 2.32919254658385 28 10 52.2 0 101 18 42 69 XP_024500773.1 Hypothetical protein SRAE_0000068266 [Strongyloides ratti] diamond 375 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32654760 32654760 PRJNA771359_S_NODE_4240_length_164_cov_1.842520_g4157_i0 PRJNA771359 4240 164 1.84252 3.0217328 Nematoda 6231 Nematoda Nematoda 71.2 7.14e-13   NR VDM46117.1 6265 g4157 i0 78.6 7.84756097560976 42 9 76.8 0 159 34 91 132 VDM46117.1 unnamed protein product [Toxocara canis] diamond 1287 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;