RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA771359", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA771359 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5850565 5850565 PRJNA771359_S_NODE_2205_length_225_cov_3.728723_g2122_i0 PRJNA771359 2205 225 3.728723 8.38962675 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 91.6 4.24e-14   NTclustered gi|1027949921|ref|XR_001678647.1| 31271 g2122 i0 78.523 1.75555555555556 149 24 65 6 9 154 1322 1465 Plasmodium chabaudi chabaudi 28S ribosomal RNA (PCHAS_0521461), rRNA blastn 395 91.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
5850579 5850579 PRJNA771359_S_NODE_2785_length_201_cov_2.121951_g2702_i0 PRJNA771359 2785 201 2.121951 4.26512151 Nephromyces sp. ex Molgula occidentalis 2544991 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.04e-4   NTclustered gi|1735073273|gb|MK573204.1| 2544991 g2702 i0 91.111 0.223880597014925 45 3 22 1 76 119 26345 26389 Nephromyces sp. ex Molgula occidentalis isolate 638 apicoplast, partial genome blastn 45 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Nephromyces Nephromyces sp. ex Molgula occidentalis
9675487 9675487 PRJNA771359_S_NODE_3428_length_181_cov_2.701389_g3345_i0 PRJNA771359 3428 181 2.701389 4.88951409 Plasmodium fragile 5857 SAR_Eukaryotes SAR_Eukaryotes 124 3.2099999999999994e-24   NTclustered gi|817740972|ref|XM_012480018.1| 5857 g3345 i0 81.169 3.70718232044199 154 29 85 0 22 175 385 232 Plasmodium fragile ubiquitin-60S ribosomal protein L40 (AK88_02387), partial mRNA blastn 671 124 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium fragile
12226710 12226710 PRJNA771359_S_NODE_1090_length_318_cov_13.380783_g1007_i0 PRJNA771359 1090 318 13.380783 42.55088994 uncultured Eimeriidae 404735 SAR_Eukaryotes SAR_Eukaryotes 486 6.889999999999999e-133   NTclustered gi|134022138|gb|EF023488.1| 404735 g1007 i0 94.099 100.729559748428 322 15 100 4 1 318 1630 1309 Eimeriidae environmental sample clone Amb_18S_1074 18S ribosomal RNA gene, partial sequence blastn 32032 486 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;