RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA771359", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA771359 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14775938 14775938 PRJNA771359_S_NODE_3272_length_185_cov_6.682432_g3189_i0 PRJNA771359 3272 185 6.682432 12.3624992 Estrella lausannensis 483423 Bacteria Bacteria 169 1.5e-37   NTclustered gi|343183590|gb|JN201889.1| 483423 g3189 i0 85.987 63.1513513513514 157 22 85 0 24 180 2290 2446 Estrella lausannensis 23S ribosomal RNA gene, complete sequence blastn 11683 169 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis
22424383 22424383 PRJNA771359_S_NODE_858_length_348_cov_1.665595_g775_i0 PRJNA771359 858 348 1.665595 5.7962706 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 544 4.459999999999999e-150   NTclustered gi|2874254045|emb|OY970369.1| 305355 g775 i0 94.842 112.373563218391 349 16 100 2 1 348 174776 174429 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 39106 544 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
24973657 24973657 PRJNA771359_S_NODE_3180_length_188_cov_2.364238_g3097_i0 PRJNA771359 3180 188 2.364238 4.44476744 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 298 1.87e-76   NTclustered gi|2874254045|emb|OY970369.1| 305355 g3097 i0 95.213 170.324468085106 188 9 100 0 1 188 175122 174935 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 32021 298 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
30338112 30338112 PRJNA771359_S_NODE_4872_length_155_cov_1.025424_g4789_i0 PRJNA771359 4872 155 1.025424 1.5894072 Chlamydiales bacterium 2047757 Bacteria Bacteria 50.8 5.76e-6   NR MCP5470420.1 2047757 g4789 i0 70.5 0.851612903225806 44 13 85.2 0 154 23 104 147 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 132 50.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;