RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA771359", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA771359 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2023041 2023041 PRJNA771359_S_NODE_282_length_562_cov_4.257143_g206_i0 PRJNA771359 282 562 4.257143 23.92514366 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 660 0   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g206 i0 87.831 251.864768683274 567 63 100 6 1 562 806454 807019 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 141548 660 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
23699977 23699977 PRJNA771359_S_NODE_1099_length_317_cov_12.492857_g1016_i0 PRJNA771359 1099 317 12.492857 39.60235669 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 348 3.3800000000000003e-91   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g1016 i0 94.298 679.104100946372 228 11 72 2 1 227 1307565 1307791 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 215276 348 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
24158417 24158417 PRJNA771359_S_NODE_4339_length_162_cov_6.512000_g4256_i0 PRJNA771359 4339 162 6.512 10.54944 Rubrivirga 1434037 Bacteria Bacteria 195 2.12e-45   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g4256 i0 88.344 233.58024691358 163 17 100 2 1 162 807349 807510 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 37840 195 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;