RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA771359" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 29 ✖

bioproject 1

  • PRJNA771359 · 29 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
747028 747028 PRJNA771359_S_NODE_2361_length_218_cov_2.867403_g2278_i0 PRJNA771359 2361 218 2.867403 6.25093854 Paramoeba aparasomata 2583407 Discosea other_Eukaryota 287 4.85e-73   NTclustered gi|1767098935|gb|MK518072.1| 2583407 g2278 i0 91.787 27.0275229357798 207 16 94 1 13 218 15258 15464 Paramoeba aparasomata mitochondrion, complete genome blastn 5892 287 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba aparasomata
747051 747051 PRJNA771359_S_NODE_3841_length_171_cov_7.761194_g3758_i0 PRJNA771359 3841 171 7.761194 13.27164174 Cavenderia fasciculata 261658 Evosea other_Eukaryota 250 4.73e-62   NTclustered gi|470237391|ref|XM_004350602.1| 261658 g3758 i0 92.982 99.9239766081871 171 12 100 0 1 171 393 223 Cavenderia fasciculata actin (DFA_11706), partial mRNA blastn 17087 250 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
747078 747078 PRJNA771359_S_NODE_5181_length_151_cov_1.052632_g5098_i0 PRJNA771359 5181 151 1.052632 1.58947432 Ripella sp. PS2 1217116 Discosea other_Eukaryota 248 1.46e-61   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g5098 i0 100 87.953642384106 134 0 89 0 18 151 1396 1529 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 13281 248 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
3298221 3298221 PRJNA771359_S_NODE_1843_length_246_cov_1.325359_g1760_i0 PRJNA771359 1843 246 1.325359 3.26038314 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 153 3.88e-41   NR AAA33205.1 44689 g1760 i0 89 10 82 9 100 0 246 1 458 539 AAA33205.1 elongation factor 2 [Dictyostelium discoideum] diamond 2460 154 0.993506493506494 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
3298236 3298236 PRJNA771359_S_NODE_2483_length_212_cov_5.502857_g2400_i0 PRJNA771359 2483 212 5.502857 11.66605684 Vannella sp. strain 4354/I 325074 Discosea other_Eukaryota 387 4.5e-103   NTclustered gi|62865936|gb|AY929911.1| 325074 g2400 i0 99.528 100.533018867925 212 1 100 0 1 212 1803 1592 Vannella sp. strain 4354/I 18S small subunit ribosomal RNA gene, partial sequence blastn 21313 387 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
4575319 4575319 PRJNA771359_S_NODE_2984_length_194_cov_1.949045_g2901_i0 PRJNA771359 2984 194 1.949045 3.7811473 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 111 2.72e-20   NTclustered gi|421976300|gb|JQ519406.1| 5778 g2901 i0 87.5 2.85051546391753 96 12 49 0 17 112 36 131 Vermamoeba vermiformis clone JG10.126_a3c3b3 14-3-3 protein gene, partial cds blastn 553 111 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5035091 5035091 PRJNA771359_S_NODE_2944_length_195_cov_2.069620_g2861_i0 PRJNA771359 2944 195 2.06962 4.035759 Flamella 490353 Evosea other_Eukaryota 359 8.87e-95   NTclustered gi|163943979|gb|EU186023.1| 490516 g2861 i0 100 99.4923076923077 194 0 99 0 2 195 928 735 Flamella balnearia 18S ribosomal RNA gene, partial sequence blastn 19401 359 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Flamella Flamella balnearia
5850584 5850584 PRJNA771359_S_NODE_2925_length_195_cov_22.924051_g2842_i0 PRJNA771359 2925 195 22.924051 44.70189945 Vannella septentrionalis 197531 Discosea other_Eukaryota 327 2.5e-85   NTclustered gi|300078499|gb|GU001161.1| 197531 g2842 i0 96.923 100.466666666667 195 6 100 0 1 195 3821 3627 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19591 327 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
6310790 6310790 PRJNA771359_S_NODE_3465_length_180_cov_49.482517_g3382_i0 PRJNA771359 3465 180 49.482517 89.0685306 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 294 2.3e-75   NTclustered gi|62865954|gb|AY929929.1| 325076 g3382 i0 96.133 81.9611111111111 181 5 100 2 1 180 388 209 Vannella sp. strain 4432/I internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 14753 294 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4432/I
10951163 10951163 PRJNA771359_S_NODE_4269_length_164_cov_1.196850_g4186_i0 PRJNA771359 4269 164 1.19685 1.962834 Vannella simplex 197532 Discosea other_Eukaryota 86.3 2.28e-18   NR AUO29162.1 197532 g4186 i0 82.4 0.932926829268293 51 9 93.3 0 164 12 38 88 AUO29162.1 NADH dehydrogenase subunit 1 [Vannella simplex] diamond 153 86.3 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
12226768 12226768 PRJNA771359_S_NODE_470_length_449_cov_25.075243_g387_i0 PRJNA771359 470 449 25.075243 112.58784107 Vannella sp. ECH30 1215635 Discosea other_Eukaryota 808 0   NTclustered gi|399764220|gb|JQ271731.1| 1215635 g387 i0 99.109 97.1581291759465 449 4 100 0 1 449 635 1083 Vannella sp. ECH30 18S ribosomal RNA gene, partial sequence blastn 43624 808 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ECH30
13500771 13500771 PRJNA771359_S_NODE_2091_length_230_cov_2.844560_g2008_i0 PRJNA771359 2091 230 2.84456 6.542488 Dictyostelium purpureum 5786 Evosea other_Eukaryota 116 2.54e-30   NR XP_003283628.1 5786 g2008 i0 72 4.89130434782609 75 21 97.8 0 3 227 48 122 XP_003283628.1 40S ribosomal protein S6 [Dictyostelium purpureum] diamond 1125 116 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
13500791 13500791 PRJNA771359_S_NODE_3651_length_176_cov_1.381295_g3568_i0 PRJNA771359 3651 176 1.381295 2.4310792 Vannella danica 703018 Discosea other_Eukaryota 191 3.02e-44   NTclustered gi|284808943|gb|GQ354159.1| 703018 g3568 i0 86.705 96.3636363636364 173 22 98 1 2 174 55 226 Vannella danica strain CCAP 1589/17 clone A135.1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 16960 191 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella danica
13500799 13500799 PRJNA771359_S_NODE_4291_length_163_cov_2.912698_g4208_i0 PRJNA771359 4291 163 2.912698 4.7476977400000004 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 161 2.16e-35   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g4208 i0 84.659 152.20245398773 176 11 98 5 2 161 33432 33257 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 24809 161 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
14775922 14775922 PRJNA771359_S_NODE_2232_length_224_cov_1.780749_g2149_i0 PRJNA771359 2232 224 1.780749 3.98887776 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 141 4.13e-29   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g2149 i0 78.879 10.9196428571429 232 32 99 14 1 221 32081 32306 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 2446 141 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
16049612 16049612 PRJNA771359_S_NODE_1093_length_318_cov_3.419929_g1010_i0 PRJNA771359 1093 318 3.419929 10.87537422 Platyamoeba placida 3454475 Discosea other_Eukaryota 438 1.9599999999999992e-118   NTclustered gi|33946348|gb|AY294153.1| 197527 g1010 i0 91.536 95.1918238993711 319 26 100 1 1 318 1055 737 Platyamoeba placida actin mRNA, partial cds blastn 30271 438 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
17325391 17325391 PRJNA771359_S_NODE_4214_length_164_cov_5.440945_g4131_i0 PRJNA771359 4214 164 5.440945 8.9231498 Vannella sp. strain 4362V/II 325075 Discosea other_Eukaryota 287 3.45e-73   NTclustered gi|62865934|gb|AY929909.1| 325075 g4131 i0 98.171 101.323170731707 164 3 100 0 1 164 1088 1251 Vannella sp. strain 4362V/II 18S small subunit ribosomal RNA gene, partial sequence blastn 16617 287 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4362V/II
18598829 18598829 PRJNA771359_S_NODE_635_length_390_cov_3.269122_g552_i0 PRJNA771359 635 390 3.269122 12.7495758 Paravannella minima 1443144 Discosea other_Eukaryota 243 2.06e-59   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g552 i0 80.308 77.0589743589744 325 60 83 4 68 390 53109 52787 Paravannella minima mitochondrion, complete genome blastn 30053 243 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
19873805 19873805 PRJNA771359_S_NODE_2496_length_212_cov_1.205714_g2413_i0 PRJNA771359 2496 212 1.205714 2.55611368 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 125 1.4099999999999998e-31   NR PRP84231.1 1890364 g2413 i0 94.3 1.9811320754717 70 4 99.1 0 1 210 973 1042 PRP84231.1 sensor histidine kinase/response regulator [Planoprotostelium fungivorum] diamond 420 125 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
20333184 20333184 PRJNA771359_S_NODE_2516_length_211_cov_1.701149_g2433_i0 PRJNA771359 2516 211 1.701149 3.58942439 root 1 Root_unresolved Root_unresolved 138 5.209999999999999e-38   NR AUO29168.1 197532 g2433 i0 88.6 1.99052132701422 70 8 99.5 0 210 1 262 331 AUO29168.1 cytochrome oxidase subunit 2 [Vannella simplex] diamond 420 138 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
24973645 24973645 PRJNA771359_S_NODE_2280_length_222_cov_2.486486_g2197_i0 PRJNA771359 2280 222 2.486486 5.51999892 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 132 1.26e-36   NR KAF2070957.1 133409 g2197 i0 80.6 8.7027027027027 72 14 97.3 0 220 5 8 79 KAF2070957.1 hypothetical protein CYY_007730 [Polysphondylium violaceum] diamond 1932 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
24973668 24973668 PRJNA771359_S_NODE_3820_length_172_cov_1.459259_g3737_i0 PRJNA771359 3820 172 1.459259 2.50992548 Paramoeba aparasomata 2583407 Discosea other_Eukaryota 147 6.429999999999999e-31   NTclustered gi|1767098935|gb|MK518072.1| 2583407 g3737 i0 84.314 0.88953488372093 153 21 87 3 21 170 14854 14702 Paramoeba aparasomata mitochondrion, complete genome blastn 153 147 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba aparasomata
24973679 24973679 PRJNA771359_S_NODE_4320_length_163_cov_1.230159_g4237_i0 PRJNA771359 4320 163 1.230159 2.00515917 Heterostelium album 2086695 Evosea other_Eukaryota 62.1 2.26e-5   NTclustered gi|1160575580|ref|XM_020582530.1| 670386 g4237 i0 85.246 1.23312883435583 61 7 37 2 52 111 448 507 Polysphondylium pallidum PN500 S60 ribosomal protein L34 (rpl34), partial mRNA blastn 201 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
27717105 27717105 PRJNA771359_S_NODE_1804_length_249_cov_2.160377_g1721_i0 PRJNA771359 1804 249 2.160377 5.37933873 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.1 1.6e-6   NR XP_004348720.1 1257118 g1721 i0 52.5 0.481927710843373 40 19 48.2 0 248 129 91 130 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 120 53.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28790096 28790096 PRJNA771359_S_NODE_3607_length_177_cov_2.714286_g3524_i0 PRJNA771359 3607 177 2.714286 4.80428622 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.8 1.45e-8   NR XP_004334493.1 1257118 g3524 i0 46.8 1.59322033898305 47 21 76.3 2 175 41 25 69 XP_004334493.1 uncharacterized protein ACA1_330540 [Acanthamoeba castellanii str. Neff] diamond 282 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29200845 29200845 PRJNA771359_S_NODE_3069_length_192_cov_1.251613_g2986_i0 PRJNA771359 3069 192 1.251613 2.40309696 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 101 3.3899999999999996e-24   NR XP_004341414.1 1257118 g2986 i0 75.4 0.953125 61 15 95.3 0 188 6 20 80 XP_004341414.1 Factin-capping protein subunit alpha-2, putative [Acanthamoeba castellanii str. Neff] diamond 183 101 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29927086 29927086 PRJNA771359_S_NODE_431_length_462_cov_1.637647_g350_i0 PRJNA771359 431 462 1.637647 7.56592914 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 133 2.02e-33   NR PRP74799.1 1890364 g350 i0 52.7 0.850649350649351 131 59 85.1 1 459 67 387 514 PRP74799.1 actin binding protein [Planoprotostelium fungivorum] diamond 393 133 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31696779 31696779 PRJNA771359_S_NODE_4277_length_164_cov_0.897638_g4194_i0 PRJNA771359 4277 164 0.897638 1.47212632 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 5.02e-18   NR XP_004358308.1 1257118 g4194 i0 70.9 1.00609756097561 55 15 98.8 1 1 162 169 223 XP_004358308.1 papain family cysteine protease subfamily protein [Acanthamoeba castellanii str. Neff] diamond 165 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32392838 32392838 PRJNA771359_S_NODE_2839_length_199_cov_2.129630_g2756_i0 PRJNA771359 2839 199 2.12963 4.2379637 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 98.6 1.13e-23   NR KAH3757673.1 1580589 g2756 i0 64.6 4.95979899497487 65 23 98 0 195 1 34 98 KAH3757673.1 60S ribosomal protein L10a [Pelomyxa schiedti] diamond 987 98.6 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;