RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA770826", tax_phylum = "Minisyncoccota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA770826 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28411415 28411415 PRJNA770826_P_NODE_41206_length_163_cov_0.912281_g41035_i0 PRJNA770826 41206 163 0.912281 1.48701803 Minisyncoccota bacterium 2053589 Bacteria Bacteria 91.7 7.13e-20   NR MEZ0208791.1 2053589 g41035 i0 79.2 0.975460122699387 53 11 97.5 0 161 3 643 695 MEZ0208791.1 glucoamylase family protein [Candidatus Paceibacterota bacterium] diamond 159 91.7 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30125798 30125798 PRJNA770826_P_NODE_1952_length_619_cov_4.247368_g1792_i0 PRJNA770826 1952 619 4.247368 26.29120792 Bacteria 2 Bacteria Bacteria 98.2 2.48e-22   NR MBP9717216.1 2053589 g1792 i0 42.5 3.76090468497577 127 72 61.6 1 209 589 5 130 MBP9717216.1 tryptophan-rich sensory protein [Candidatus Paceibacterota bacterium] diamond 2328 99 0.991919191919192 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32234888 32234888 PRJNA770826_P_NODE_10258_length_252_cov_0.876847_g10087_i0 PRJNA770826 10258 252 0.876847 2.20965444 Minisyncoccota bacterium 2053589 Bacteria Bacteria 115 3.7299999999999998e-31   NR MDR3549538.1 2053589 g10087 i0 63.8 0.952380952380952 80 29 95.2 0 242 3 8 87 MDR3549538.1 small nuclear ribonucleoprotein Sm D2 [Candidatus Paceibacterota bacterium] diamond 240 115 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;