RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA770826", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA770826 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12226636 12226636 PRJNA770826_P_NODE_38070_length_164_cov_0.904348_g37899_i0 PRJNA770826 38070 164 0.904348 1.48313072 Metamycoplasma hominis 2098 Bacteria Bacteria 171 3.62e-38   NTclustered gi|1495885541|gb|CP033021.1| 2098 g37899 i0 86.928 134.079268292683 153 18 93 2 1 152 94450 94299 Metamycoplasma hominis strain TO0613 chromosome, complete genome blastn 21989 171 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hominis
21149419 21149419 PRJNA770826_P_NODE_13997_length_215_cov_1.566265_g13826_i0 PRJNA770826 13997 215 1.566265 3.36746975 Bacillati 1783272 Bacteria Bacteria 94.4 8.1899999999999992e-21   NR HHX32628.1 37628 g13826 i0 61.4 18.6279069767442 70 27 97.7 0 1 210 286 355 HHX32628.1 elongation factor Tu [Mollicutes bacterium] diamond 4005 94.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium
21149426 21149426 PRJNA770826_P_NODE_15257_length_207_cov_0.987342_g15086_i0 PRJNA770826 15257 207 0.987342 2.04379794 Candidatus Izemoplasma sp. B36 3242468 Bacteria Bacteria 128 2.93e-25   NTclustered gi|2794178705|gb|CP168077.1| 3242468 g15086 i0 82.432 14.1980676328502 148 24 71 2 23 169 591771 591625 Candidatus Izemoplasma sp. B36 chromosome, complete genome blastn 2939 128 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izemoplasma sp. B36

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;