RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA770826", tax_clade = "Candidatus Halobeggiatoa" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Halobeggiatoa · 1 ✖

bioproject 1

  • PRJNA770826 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21149508 21149508 PRJNA770826_P_NODE_32677_length_166_cov_0.888889_g32506_i0 PRJNA770826 32677 166 0.888889 1.47555574 Candidatus Halobeggiatoa sp. HSG11 3055495 Bacteria Bacteria 89 3.34e-19   NR MDM8566288.1 3055495 g32506 i0 79.6 12.6686746987952 54 11 97.6 0 3 164 177 230 MDM8566288.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Candidatus Halobeggiatoa sp. HSG11] diamond 2103 89 1 Bacteria Candidatus Halobeggiatoa Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae   Candidatus Halobeggiatoa sp. HSG11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;