RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA770826" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA770826 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8400029 8400029 PRJNA770826_P_NODE_11987_length_233_cov_0.972826_g11816_i0 PRJNA770826 11987 233 0.972826 2.26668458 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 418 1.7799999999999995e-112   NTclustered gi|1200177733|gb|MF039367.1| 190325 g11816 i0 99.142 71.175965665236 233 1 100 1 1 233 3475 3706 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16584 418 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
8400215 8400215 PRJNA770826_P_NODE_9647_length_260_cov_1.336493_g9476_i0 PRJNA770826 9647 260 1.336493 3.4748818 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 191 4.81e-44   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g9476 i0 87.135 133.761538461538 171 18 65 4 89 258 2749 2916 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 34778 191 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;