RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA770361", tax_kingdom = "Thermotogati" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 4 ✖

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA770361 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23699291 23699291 PRJNA770361_P_NODE_16839_length_246_cov_1.352601_g16744_i0 PRJNA770361 16839 246 1.352601 3.32739846 Deinococcus sp. VB343 3385567 Bacteria Bacteria 156 1.65e-33   NTclustered gi|2905211496|gb|CP179945.1| 3385567 g16744 i0 79.545 42.4430894308943 220 43 89 2 28 246 1463475 1463257 Deinococcus sp. VB343 chromosome 1, complete sequence blastn 10441 156 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB343
26682858 26682858 PRJNA770361_P_NODE_18081_length_244_cov_0.912281_g17986_i0 PRJNA770361 18081 244 0.912281 2.22596564 Truepera 332248 Bacteria Bacteria 88.6 9.96e-20   NR WP_013176890.1 332249 g17986 i0 82.5 2.07786885245902 57 10 70.1 0 1 171 136 192 WP_013176890.1 protein jag [Truepera radiovictrix] diamond 507 88.6 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
31548410 31548410 PRJNA770361_P_NODE_8476_length_323_cov_1.464000_g8381_i0 PRJNA770361 8476 323 1.464 4.72872 root 1 Root_unresolved Root_unresolved 110 7.830000000000001e-26   NR MCA9840345.1 2026798 g8381 i0 53.1 3.64086687306502 98 46 91 0 1 294 319 416 MCA9840345.1 acetyl-CoA C-acyltransferase [Trueperaceae bacterium] diamond 1176 111 0.990990990990991 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
31664982 31664982 PRJNA770361_P_NODE_5157_length_414_cov_1.826979_g5062_i0 PRJNA770361 5157 414 1.826979 7.56369306 Deinococcus radiotolerans 1309407 Bacteria Bacteria 65.1 1.5e-9   NR WP_189070513.1 1309407 g5062 i0 38.4 1.2536231884058 86 47 60.1 4 159 407 151 233 WP_189070513.1 phospholipase A2 [Deinococcus radiotolerans] diamond 519 65.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiotolerans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;