RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA770361", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

  • Bacillati · 5 ✖

bioproject 1

  • PRJNA770361 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16509273 16509273 PRJNA770361_P_NODE_13933_length_252_cov_1.307263_g13838_i0 PRJNA770361 13933 252 1.307263 3.29430276 Mesomycoplasma 2923352 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1958638505|gb|MW498314.1| 2100 g13838 i0 100 98.7539682539683 252 0 100 0 1 252 1428 1679 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 24886 466 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
16509286 16509286 PRJNA770361_P_NODE_18093_length_244_cov_0.912281_g17998_i0 PRJNA770361 18093 244 0.912281 2.22596564 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 137 2.84e-36   NR HHX00198.1 1898209 g17998 i0 86.1 0.971311475409836 79 11 97.1 0 243 7 137 215 HHX00198.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Acholeplasmataceae bacterium] diamond 237 137 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
20332815 20332815 PRJNA770361_P_NODE_5916_length_386_cov_1.744409_g5821_i0 PRJNA770361 5916 386 1.744409 6.73341874 Mycoplasmopsis 2767358 Bacteria Bacteria 712 0   NTclustered gi|2496025365|gb|CP123300.1| 28903 g5821 i0 100 176.554404145078 385 0 99 0 1 385 483221 482837 Mycoplasmopsis bovis strain 15DD0238 chromosome, complete genome blastn 68150 712 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis
31633391 31633391 PRJNA770361_P_NODE_16756_length_247_cov_0.896552_g16661_i0 PRJNA770361 16756 247 0.896552 2.21448344 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 125 5.299999999999999e-32   NR NLD27149.1 1898209 g16661 i0 74.4 1.91902834008097 82 21 99.6 0 246 1 315 396 NLD27149.1 L-rhamnose isomerase [Acholeplasmataceae bacterium] diamond 474 125 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32487851 32487851 PRJNA770361_P_NODE_5419_length_405_cov_1.162651_g5324_i0 PRJNA770361 5419 405 1.162651 4.70873655 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 44.7 0.0413   NR HBP25539.1 2053494 g5324 i0 30.3 0.562962962962963 76 53 56.3 0 254 27 397 472 HBP25539.1 hypothetical protein [Acholeplasmatales bacterium] diamond 228 44.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;