RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA770361", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA770361 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19873203 19873203 PRJNA770361_P_NODE_3336_length_516_cov_1.760722_g3241_i0 PRJNA770361 3336 516 1.760722 9.08532552 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 289 3.54e-73   NTclustered gi|290973566|ref|XM_002669473.1| 5762 g3241 i0 91.08 39.5038759689922 213 19 41 0 2 214 1108 1320 Naegleria gruberi beta-tubulin (NAEGRDRAFT_56391), partial mRNA blastn 20384 289 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30031298 30031298 PRJNA770361_P_NODE_16171_length_248_cov_0.891429_g16076_i0 PRJNA770361 16171 248 0.891429 2.21074392 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.4 2.68e-7   NR XP_002679081.1 5762 g16076 i0 78.9 3.14516129032258 38 8 46 0 246 133 473 510 XP_002679081.1 uncharacterized protein NAEGRDRAFT_65679 [Naegleria gruberi] diamond 780 57.8 0.993079584775087 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;