RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA770361", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA770361 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3297640 3297640 PRJNA770361_P_NODE_423_length_1337_cov_3.840190_g388_i0 PRJNA770361 423 1337 3.84019 51.3433403 Paramoeba branchiphila 308475 Discosea other_Eukaryota 815 0   NTclustered gi|226347442|gb|FJ807261.1| 308475 g388 i0 78.969 94.1039640987285 1203 245 90 7 38 1236 2 1200 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 125817 815 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
12225982 12225982 PRJNA770361_P_NODE_13930_length_252_cov_1.307263_g13835_i0 PRJNA770361 13930 252 1.307263 3.29430276 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 228 3.5399999999999984e-55   NTclustered gi|470377128|ref|XM_004333304.1| 1257118 g13835 i0 83.2 4.95238095238095 250 40 99 2 4 252 327 79 Acanthamoeba castellanii str. Neff glutathione S-transferase family protein, putative (ACA1_190760), partial mRNA blastn 1248 228 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19873260 19873260 PRJNA770361_P_NODE_6936_length_356_cov_1.102473_g6841_i0 PRJNA770361 6936 356 1.102473 3.92480388 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 182 1.66e-52   NR XP_004333784.1 1257118 g6841 i0 73.3 7.8623595505618 116 31 97.8 0 4 351 116 231 XP_004333784.1 methylmalonatesemialdehyde dehydrogenase (acylating), putative [Acanthamoeba castellanii str. Neff] diamond 2799 182 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23699408 23699408 PRJNA770361_P_NODE_6659_length_363_cov_1.527586_g6564_i0 PRJNA770361 6659 363 1.527586 5.54513718 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 161 4.22e-49   NR XP_004352812.1 1257118 g6564 i0 86.4 12.9834710743802 88 12 72.7 0 348 85 1 88 XP_004352812.1 ribosomal L37ae protein family [Acanthamoeba castellanii str. Neff] diamond 4713 162 0.993827160493827 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27031149 27031149 PRJNA770361_P_NODE_10342_length_293_cov_1.036364_g10247_i0 PRJNA770361 10342 293 1.036364 3.03654652 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 155 1.92e-44   NR AFD36248.1 5755 g10247 i0 74.2 8.76450511945393 97 21 99.3 1 292 2 143 235 AFD36248.1 protein kinase C19 [Acanthamoeba castellanii] diamond 2568 155 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27717044 27717044 PRJNA770361_P_NODE_17064_length_246_cov_0.901734_g16969_i0 PRJNA770361 17064 246 0.901734 2.21826564 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.5 1.4e-4   NR XP_004333326.1 1257118 g16969 i0 44.1 0.719512195121951 59 30 68.3 1 168 1 11 69 XP_004333326.1 universal stress domain containing protein [Acanthamoeba castellanii str. Neff] diamond 177 48.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28032514 28032514 PRJNA770361_P_NODE_15965_length_248_cov_0.891429_g15870_i0 PRJNA770361 15965 248 0.891429 2.21074392 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 92.8 2.99e-20   NR XP_004341763.1 1257118 g15870 i0 70.7 2.70967741935484 75 22 90.7 0 241 17 178 252 XP_004341763.1 TolAlike protein [Acanthamoeba castellanii str. Neff] diamond 672 92.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28727024 28727024 PRJNA770361_P_NODE_15007_length_250_cov_0.881356_g14912_i0 PRJNA770361 15007 250 0.881356 2.20339 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.8 5.64e-5   NR XP_004353416.1 1257118 g14912 i0 40 1.56 65 38 76.8 1 21 212 17 81 XP_004353416.1 Activating signal cointegrator protein [Acanthamoeba castellanii str. Neff] diamond 390 50.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29137744 29137744 PRJNA770361_P_NODE_7629_length_340_cov_1.168539_g7534_i0 PRJNA770361 7629 340 1.168539 3.9730326 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 7.88e-9   NR XP_004347761.1 1257118 g7534 i0 40.2 0.988235294117647 112 61 98.8 4 337 2 1 106 XP_004347761.1 iodothyronine deiodinase [Acanthamoeba castellanii str. Neff] diamond 336 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29642337 29642337 PRJNA770361_P_NODE_17110_length_246_cov_0.901734_g17015_i0 PRJNA770361 17110 246 0.901734 2.21826564 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 64.7 2.03e-10   NR XP_004368103.1 1257118 g17015 i0 40.2 1 82 44 100 1 246 1 57 133 XP_004368103.1 HMG (high mobility group) box domain containing protein [Acanthamoeba castellanii str. Neff] diamond 246 64.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30021793 30021793 PRJNA770361_P_NODE_16771_length_247_cov_0.896552_g16676_i0 PRJNA770361 16771 247 0.896552 2.21448344 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 91.3 3.31e-19   NR XP_004337378.1 1257118 g16676 i0 57.3 0.995951417004049 82 35 99.6 0 247 2 131 212 XP_004337378.1 Major Vault Protein repeatcontaining protein [Acanthamoeba castellanii str. Neff] diamond 246 91.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32392781 32392781 PRJNA770361_P_NODE_15119_length_250_cov_0.881356_g15024_i0 PRJNA770361 15119 250 0.881356 2.20339 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 110 1.11e-26   NR XP_004341586.1 1257118 g15024 i0 64.2 0.972 81 29 97.2 0 6 248 86 166 XP_004341586.1 elongation factor 1-gamma family protein [Acanthamoeba castellanii str. Neff] diamond 243 110 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;