RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA768450" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA768450 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27495679 27495679 PRJNA768450_S_NODE_6383_length_262_cov_2.061033_g6334_i0 PRJNA768450 6383 262 2.061033 5.39990646 Helicobacter pylori 210 Bacteria Bacteria 54.3 1.84e-7   NR GAA9176533.1 210 g6334 i0 57.1 0.641221374045801 56 23 64.1 1 260 93 1 55 GAA9176533.1 hypothetical protein Kyoto193A_0850 [Helicobacter pylori] diamond 168 54.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27653658 27653658 PRJNA768450_S_NODE_12264_length_204_cov_4.187097_g12215_i0 PRJNA768450 12264 204 4.187097 8.54167788 Helicobacter pylori 210 Bacteria Bacteria 63.2 1.45e-11   NR GAA8838853.1 210 g12215 i0 93.3 0.441176470588235 30 2 44.1 0 3 92 14 43 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 90 63.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;