RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA768450", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA768450 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2021315 2021315 PRJNA768450_P_NODE_1642_length_196_cov_2.491018_g1570_i0 PRJNA768450 1642 196 2.491018 4.88239528 Phycisphaerales bacterium 2052180 Bacteria Bacteria 150 5.839999999999999e-32   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g1570 i0 93.939 50.515306122449 99 6 96 0 1 99 2192461 2192363 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 9901 150 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
18597842 18597842 PRJNA768450_S_NODE_6415_length_261_cov_1172.089623_g6366_i0 PRJNA768450 6415 261 1172.089623 3059.15391603 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 243 1.3200000000000001e-59   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g6366 i0 88.293 60.1647509578544 205 20 78 4 1 203 1866201 1866403 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 15703 243 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;