RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA768450" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA768450 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2021315 2021315 PRJNA768450_P_NODE_1642_length_196_cov_2.491018_g1570_i0 PRJNA768450 1642 196 2.491018 4.88239528 Phycisphaerales bacterium 2052180 Bacteria Bacteria 150 5.839999999999999e-32   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g1570 i0 93.939 50.515306122449 99 6 96 0 1 99 2192461 2192363 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 9901 150 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
4574402 4574402 PRJNA768450_S_NODE_7824_length_243_cov_1.000000_g7775_i0 PRJNA768450 7824 243 1 2.43 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 289 1.53e-73   NTclustered gi|2874253690|emb|OY969416.1| 412056 g7775 i0 90.222 298.938271604938 225 16 91 5 2 222 1316734 1316512 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 72642 289 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8859254 8859254 PRJNA768450_P_NODE_1747_length_176_cov_1.285714_g1675_i0 PRJNA768450 1747 176 1.285714 2.26285664 Opitutus 178440 Bacteria Bacteria 248 1.7599999999999998e-61   NTclustered gi|470483113|ref|NR_076574.1| 107709 g1675 i0 92.529 21.4034090909091 174 11 98 2 4 176 2252 2080 Opitutus terrae strain PB90-1 23S ribosomal RNA gene, complete sequence blastn 3767 248 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
15234612 15234612 PRJNA768450_S_NODE_11132_length_211_cov_11.475309_g11083_i0 PRJNA768450 11132 211 11.475309 24.21290199 Verrucomicrobiota 74201 Bacteria Bacteria 237 4.77e-58   NTclustered gi|2874254065|emb|OY970130.1| 412056 g11083 i0 87.379 32.1421800947867 206 26 98 0 5 210 5152308 5152513 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 6782 237 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18597842 18597842 PRJNA768450_S_NODE_6415_length_261_cov_1172.089623_g6366_i0 PRJNA768450 6415 261 1172.089623 3059.15391603 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 243 1.3200000000000001e-59   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g6366 i0 88.293 60.1647509578544 205 20 78 4 1 203 1866201 1866403 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 15703 243 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
27242827 27242827 PRJNA768450_S_NODE_16583_length_183_cov_0.977612_g16534_i0 PRJNA768450 16583 183 0.977612 1.78902996 Lentisphaeria bacterium 2053569 Bacteria Bacteria 43.5 0.00551   NR MDP7743837.1 2053569 g16534 i0 42.5 0.655737704918033 40 23 65.6 0 6 125 40 79 MDP7743837.1 hypothetical protein [Lentisphaeria bacterium] diamond 120 43.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;