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contig_metadata

20 rows where bioproject = "PRJNA768450" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA768450 · 20 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
745490 745490 PRJNA768450_S_NODE_13621_length_197_cov_1.243243_g13572_i0 PRJNA768450 13621 197 1.243243 2.44918871 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 161 2.7199999999999997e-35   NTclustered gi|470509261|ref|XM_004349682.1| 1257118 g13572 i0 98.889 35.5837563451777 90 1 46 0 107 196 363 274 Acanthamoeba castellanii str. Neff ribosomal protein S10p/S20e, putative (ACA1_034550), partial mRNA blastn 7010 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
746007 746007 PRJNA768450_S_NODE_4761_length_293_cov_692.393443_g4712_i0 PRJNA768450 4761 293 692.393443 2028.71278799 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 309 1.4600000000000003e-79   NTclustered gi|909719694|gb|KT185628.1| 5755 g4712 i0 97.778 4.16382252559727 180 3 61 1 111 290 2175 1997 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 1220 309 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3758089 3758089 PRJNA768450_S_NODE_5003_length_287_cov_1124.067227_g4954_i0 PRJNA768450 5003 287 1124.067227 3226.07294149 Acanthamoeba 5754 Discosea other_Eukaryota 431 2.919999999999999e-116   NTclustered gi|1497462138|gb|MG945010.1| 5755 g4954 i0 99.578 82.5783972125435 237 0 83 1 1 237 231 466 Acanthamoeba castellanii isolate PRZT013 18S ribosomal RNA gene, partial sequence blastn 23700 431 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6310258 6310258 PRJNA768450_S_NODE_18445_length_175_cov_5.087302_g18396_i0 PRJNA768450 18445 175 5.087302 8.9027785 root 1 Root_unresolved Root_unresolved 316 4.74e-82   NTclustered gi|909719646|gb|KT185626.1| 5755 g18396 i0 99.429 43.6 175 0 100 1 1 175 3897 3724 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7630 316 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9673861 9673861 PRJNA768450_S_NODE_12348_length_204_cov_1.561290_g12299_i0 PRJNA768450 12348 204 1.56129 3.1850316 Amoebozoa sp. SZA19 1089205 Root_unresolved Root_unresolved 366 5.599999999999998e-97   NTclustered gi|441475832|emb|FN562422.4| 1089205 g12299 i0 100 11.5637254901961 198 0 97 0 1 198 490 293 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 2359 366 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
12225471 12225471 PRJNA768450_S_NODE_22530_length_164_cov_1.086957_g22481_i0 PRJNA768450 22530 164 1.086957 1.78260948 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 174 2.8e-39   NTclustered gi|470511767|ref|XM_004352013.1| 1257118 g22481 i0 98 0.609756097560976 100 2 61 0 7 106 471 570 Acanthamoeba castellanii str. Neff ribosomal protein S7e, putative (ACA1_036040), partial mRNA blastn 100 174 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13499383 13499383 PRJNA768450_S_NODE_17671_length_178_cov_2.000000_g17622_i0 PRJNA768450 17671 178 2 3.56 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 102 1.47e-17   NTclustered gi|470413776|ref|XM_004336568.1| 1257118 g17622 i0 98.276 0.325842696629214 58 1 33 0 1 58 933 990 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_271380), partial mRNA blastn 58 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13499845 13499845 PRJNA768450_S_NODE_6551_length_260_cov_1.132701_g6502_i0 PRJNA768450 6551 260 1.132701 2.9450226 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 372 1.6e-98   NTclustered gi|927486|emb|X79205.1| 5755 g6502 i0 92.748 2.06923076923077 262 11 100 6 1 260 1297 1042 A.castellanii mRNA for methionine adenosyltransferase blastn 538 372 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14774413 14774413 PRJNA768450_S_NODE_14532_length_192_cov_1.531469_g14483_i0 PRJNA768450 14532 192 1.531469 2.94042048 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 99 2.09e-16   NTclustered gi|47717678|gb|AY604039.1| 5755 g14483 i0 89.873 0.578125 79 4 41 3 1 78 3509 3584 Acanthamoeba castellanii mannose-binding protein (MBP1) gene, complete cds blastn 111 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14774454 14774454 PRJNA768450_S_NODE_15712_length_186_cov_2.335766_g15663_i0 PRJNA768450 15712 186 2.335766 4.34452476 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 292 8.61e-75   NTclustered gi|932090235|gb|KP054475.2| 5757 g15663 i0 97.11 44.9569892473118 173 5 93 0 12 184 24021 23849 Acanthamoeba polyphaga strain Linc Ap-1 mitochondrion, complete genome blastn 8362 292 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
14775041 14775041 PRJNA768450_S_NODE_8172_length_238_cov_15.455026_g8123_i0 PRJNA768450 8172 238 15.455026 36.78296188 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 385 1.86e-102   NTclustered gi|28194583|gb|AF479527.1| 5757 g8123 i0 99.526 67.7647058823529 211 1 89 0 2 212 905 1115 Acanthamoeba polyphaga strain JAC S2 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 16128 385 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
15234829 15234829 PRJNA768450_S_NODE_9152_length_228_cov_3.089385_g9103_i0 PRJNA768450 9152 228 3.089385 7.0437978 Acanthamoeba 5754 Discosea other_Eukaryota 407 3.7699999999999995e-109   NTclustered gi|28194583|gb|AF479527.1| 5757 g9103 i0 99.115 92.1052631578947 226 2 99 0 2 227 849 624 Acanthamoeba polyphaga strain JAC S2 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 21000 407 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
16048209 16048209 PRJNA768450_S_NODE_17873_length_177_cov_4.906250_g17824_i0 PRJNA768450 17873 177 4.90625 8.6840625 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 281 1.75e-71   NTclustered gi|909719694|gb|KT185628.1| 5755 g17824 i0 95.977 28.1468926553672 174 5 97 1 1 172 326 499 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 4982 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16509188 16509188 PRJNA768450_S_NODE_25153_length_155_cov_2.858491_g25104_i0 PRJNA768450 25153 155 2.858491 4.43066105 Acanthamoeba 5754 Discosea other_Eukaryota 231 1.53e-56   NTclustered gi|1146076837|gb|KY072782.1| 5755 g25104 i0 100 80.9677419354839 125 0 81 0 1 125 822 946 Acanthamoeba castellanii strain ISC-UAH 163/15a 18S ribosomal RNA gene, partial sequence blastn 12550 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17324133 17324133 PRJNA768450_S_NODE_22634_length_164_cov_0.886957_g22585_i0 PRJNA768450 22634 164 0.886957 1.45460948 Cochliopodium arabianum 1676989 Discosea other_Eukaryota 233 4.56e-57   NTclustered gi|861685103|gb|KP244685.1| 1676989 g22585 i0 93.293 39.8048780487805 164 1 100 4 1 164 176 329 Cochliopodium arabianum voucher YT360_361 18S ribosomal RNA gene, partial sequence blastn 6528 233 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium arabianum
17324209 17324209 PRJNA768450_S_NODE_24714_length_159_cov_2.090909_g24665_i0 PRJNA768450 24714 159 2.090909 3.32454531 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 137 3.53e-28   NTclustered gi|470409461|ref|XM_004336143.1| 1257118 g24665 i0 95.349 0.540880503144654 86 4 54 0 74 159 240 155 Acanthamoeba castellanii str. Neff ribosomal protein S21e, putative (ACA1_131810), partial mRNA blastn 86 137 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17324224 17324224 PRJNA768450_S_NODE_25274_length_154_cov_3.171429_g25225_i0 PRJNA768450 25274 154 3.171429 4.88400066 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 152 1.2099999999999999e-32   NTclustered gi|470486463|ref|XM_004344558.1| 1257118 g25225 i0 97.727 1.94155844155844 88 2 57 0 67 154 372 285 Acanthamoeba castellanii str. Neff 60s Acidic ribosomal protein (ACA1_277960), partial mRNA blastn 299 152 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19872914 19872914 PRJNA768450_S_NODE_8016_length_241_cov_0.979167_g7967_i0 PRJNA768450 8016 241 0.979167 2.35979247 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 281 2.54e-71   NTclustered gi|470433981|ref|XM_004338587.1| 1257118 g7967 i0 99.355 0.643153526970954 155 1 64 0 1 155 302 456 Acanthamoeba castellanii str. Neff 60S ribosomal protein L36, putative (ACA1_088670), partial mRNA blastn 155 281 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20332631 20332631 PRJNA768450_S_NODE_19096_length_173_cov_1.830645_g19047_i0 PRJNA768450 19096 173 1.830645 3.16701585 Ripella 1217112 Discosea other_Eukaryota 215 1.75e-51   NTclustered gi|1269228356|gb|MF683481.1| 2047821 g19047 i0 94.928 80.4104046242775 138 6 79 1 8 144 855 992 Ripella platypodia clone 23.4.31 18S ribosomal RNA gene, partial sequence blastn 13911 215 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
24157888 24157888 PRJNA768450_S_NODE_20779_length_167_cov_4.542373_g20730_i0 PRJNA768450 20779 167 4.542373 7.58576291 Acanthamoeba 5754 Discosea other_Eukaryota 300 4.53e-77   NTclustered gi|56718169|gb|AY702984.1| 306330 g20730 i0 99.394 99.0119760479042 165 1 99 0 3 167 766 930 Acanthamoeba sp. CDC # V021 small subunit ribosomal RNA gene, partial sequence blastn 16535 300 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba genotype T4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;