RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA767802" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA767802 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29927013 29927013 PRJNA767802_P_NODE_5991_length_326_cov_1.472924_g5918_i0 PRJNA767802 5991 326 1.472924 4.80173224 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 96.3 1.66e-20   NR MFM2169900.1 2026799 g5918 i0 60 0.920245398773006 100 40 92 0 19 318 493 592 MFM2169900.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 300 96.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32171465 32171465 PRJNA767802_P_NODE_4538_length_396_cov_2.239193_g4465_i0 PRJNA767802 4538 396 2.239193 8.86720428 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 148 2.31e-41   NR MEQ1851759.1 2811408 g4465 i0 89.6 0.583333333333333 77 8 58.3 0 395 165 205 281 MEQ1851759.1 AraC family transcriptional regulator [Chthoniobacteraceae bacterium] diamond 231 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
32865851 32865851 PRJNA767802_P_NODE_3400_length_479_cov_9.641860_g3328_i0 PRJNA767802 3400 479 9.64186 46.1845094 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 97.1 5.69e-20   NR MDB4663394.1 2026799 g3328 i0 59.7 0.482254697286013 77 28 48.2 1 252 22 35 108 MDB4663394.1 phage tail protein [Verrucomicrobiota bacterium] diamond 231 97.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;