RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA767802" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA767802 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12685729 12685729 PRJNA767802_P_NODE_16430_length_166_cov_0.957265_g16357_i0 PRJNA767802 16430 166 0.957265 1.5890599 Thermus 270 Bacteria Bacteria 281 1.63e-71   NTclustered gi|2074862630|dbj|AP024931.1| 274 g16357 i0 97.561 6.91566265060241 164 4 99 0 3 166 3701 3538 Thermus thermophilus AA2-2 plasmid pAA2-2c DNA, complete sequence blastn 1148 281 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
13498956 13498956 PRJNA767802_P_NODE_4071_length_425_cov_7.768617_g3998_i0 PRJNA767802 4071 425 7.768617 33.01662225 Thermus aquaticus 271 Bacteria Bacteria 725 0   NTclustered gi|939575972|gb|CP010822.1| 498848 g3998 i0 99.747 76.5176470588235 395 1 93 0 10 404 649345 648951 Thermus aquaticus Y51MC23, complete genome blastn 32520 725 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
22422426 22422426 PRJNA767802_P_NODE_13578_length_186_cov_2.029197_g13505_i0 PRJNA767802 13578 186 2.029197 3.77430642 Thermus thermophilus 274 Bacteria Bacteria 259 8.73e-65   NTclustered gi|2074862859|dbj|AP024933.1| 274 g13505 i0 92.308 14.3602150537634 182 14 98 0 2 183 450182 450363 Thermus thermophilus AA3-7 DNA, complete genome blastn 2671 259 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
32740103 32740103 PRJNA767802_P_NODE_10940_length_214_cov_1.206061_g10867_i0 PRJNA767802 10940 214 1.206061 2.58097054 Deinococcus aestuarii 2774531 Bacteria Bacteria 55.8 4.12e-7   NR WP_343216491.1 2774531 g10867 i0 65.9 1.17757009345794 41 12 57.5 1 1 123 183 221 WP_343216491.1 MIP/aquaporin family protein [Deinococcus aestuarii] diamond 252 55.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aestuarii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;