RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA767802", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA767802 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18596954 18596954 PRJNA767802_P_NODE_9515_length_235_cov_1.096774_g9442_i0 PRJNA767802 9515 235 1.096774 2.5774189 Neocallimastigomycota sp. LLME10_2 PML-2011x 1105088 Fungi Fungi 150 7.26e-32   NTclustered gi|354683748|gb|JN049555.1| 1105088 g9442 i0 90.351 71.7617021276596 114 11 49 0 83 196 134 247 Neocallimastigomycota sp. LLME10_2 PML-2011x 28S ribosomal RNA gene, partial sequence blastn 16864 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes       Neocallimastigomycota sp. LLME10_2 PML-2011x
26736272 26736272 PRJNA767802_P_NODE_5101_length_363_cov_2.388535_g5028_i0 PRJNA767802 5101 363 2.388535 8.67038205 Neocallimastix lanati (nom. inval.) 2767002 Fungi Fungi 70.1 1.23e-12   NR KAG4108230.1 2767002 g5028 i0 37.4 0.752066115702479 91 57 75.2 0 89 361 25 115 KAG4108230.1 Trm112p-domain-containing protein [Neocallimastix lanati (nom. inval.)] diamond 273 70.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix lanati (nom. inval.)
27536831 27536831 PRJNA767802_P_NODE_5183_length_359_cov_5.019355_g5110_i0 PRJNA767802 5183 359 5.019355 18.01948445 root 1 Root_unresolved Root_unresolved 125 1.47e-34   NR KAI9008584.1 82268 g5110 i0 55.4 11.5236768802228 101 45 84.4 0 16 318 11 111 KAI9008584.1 50S ribosomal protein L30e-like protein [Hyaloraphidium curvatum] diamond 4137 125 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;