RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA767802", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA767802 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12224795 12224795 PRJNA767802_P_NODE_10130_length_225_cov_1.136364_g10057_i0 PRJNA767802 10130 225 1.136364 2.556819 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 78.7 3.3e-10   NTclustered gi|2794916696|ref|XM_067893588.1| 164328 g10057 i0 88.889 19.2088888888889 63 7 28 0 29 91 288 226 Phytophthora ramorum 60S ribosomal protein L22 1 (KRP23_8180), partial mRNA blastn 4322 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
17323554 17323554 PRJNA767802_P_NODE_7574_length_276_cov_2.052863_g7501_i0 PRJNA767802 7574 276 2.052863 5.66590188 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 257 5.01e-64   NTclustered gi|2794919457|ref|XM_067895078.1| 164328 g7501 i0 85.714 89.4275362318841 245 33 88 2 28 271 13 256 Phytophthora ramorum Dynein light chain 2, cytoplasmic (KRP23_9520), partial mRNA blastn 24682 257 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
28925945 28925945 PRJNA767802_P_NODE_2488_length_572_cov_3.181644_g2421_i0 PRJNA767802 2488 572 3.181644 18.19900368 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 124 1.35e-32   NR KAG1703166.1 4784 g2421 i0 44.5 2.57517482517482 164 68 85.5 3 524 36 3 144 KAG1703166.1 hypothetical protein DVH05_008077 [Phytophthora capsici] diamond 1473 125 0.992 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;