RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA766854" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA766854 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
744993 744993 PRJNA766854_P_NODE_2201_length_288_cov_12.189189_g2075_i0 PRJNA766854 2201 288 12.189189 35.10486432 Dicranophorus luetkeni 2739556 Rotifera other_Eukaryota 230 1.1499999999999995e-55   NTclustered gi|1845957818|gb|MT522642.1| 2739556 g2075 i0 100 99.3888888888889 124 0 94 0 162 285 783 660 Dicranophorus luetkeni isolate JH_006A02 small subunit ribosomal RNA gene, partial sequence blastn 28624 230 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Dicranophorus Dicranophorus luetkeni
22422254 22422254 PRJNA766854_P_NODE_18818_length_162_cov_33.458647_g18691_i0 PRJNA766854 18818 162 33.458647 54.20300814 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 294 2.03e-75   NTclustered gi|284467602|gb|GU321390.1| 104777 g18691 i0 100 96.3888888888889 159 0 98 0 4 162 304 462 Brachionus calyciflorus isolate F6 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15615 294 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;