RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA766854" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA766854 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1205923 1205923 PRJNA766854_P_NODE_2361_length_280_cov_1.880478_g2235_i0 PRJNA766854 2361 280 1.880478 5.2653384 Bacteria 2 Bacteria Bacteria 154 6.88e-33   NTclustered gi|2874253744|emb|OY969603.1| 171953 g2235 i0 97.753 38.8785714285714 89 2 32 0 188 276 5803530 5803618 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.c.1 genome assembly, chromosome: 1 blastn 10886 154 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
17323276 17323276 PRJNA766854_P_NODE_1894_length_307_cov_1.424460_g1769_i0 PRJNA766854 1894 307 1.42446 4.3730922 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 95.3 4.69e-15   NTclustered gi|31789363|gb|AY281352.1| 171953 g1769 i0 100 12.3941368078176 51 0 49 0 195 245 1778 1728 Uncultured Acidobacteria bacterium clone 23k22 genomic sequence blastn 3805 95.3 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;