RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA766854", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA766854 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6310001 6310001 PRJNA766854_P_NODE_18585_length_222_cov_2.683938_g18458_i0 PRJNA766854 18585 222 2.683938 5.95834236 Syncephalastrum 13705 Fungi Fungi 411 2.8199999999999996e-110   NTclustered gi|175940680|gb|EU484224.1| 13706 g18458 i0 100 56.2252252252252 222 0 100 0 1 222 354 133 Syncephalastrum racemosum strain FSU 6155 clone 2 18S ribosomal RNA gene, partial sequence blastn 12482 411 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Syncephalastraceae Syncephalastrum Syncephalastrum racemosum
8398166 8398166 PRJNA766854_P_NODE_247_length_652_cov_10.118780_g183_i1 PRJNA766854 247 652 10.11878 65.9744456 Syncephalastrum racemosum 13706 Fungi Fungi 671 0   NTclustered gi|175940680|gb|EU484224.1| 13706 g183 i1 99.194 57.2868098159509 372 3 57 0 278 649 1113 742 Syncephalastrum racemosum strain FSU 6155 clone 2 18S ribosomal RNA gene, partial sequence blastn 37351 671 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Syncephalastraceae Syncephalastrum Syncephalastrum racemosum
8859097 8859097 PRJNA766854_P_NODE_18867_length_150_cov_9.330579_g18740_i0 PRJNA766854 18867 150 9.330579 13.9958685 Syncephalastrum 13705 Fungi Fungi 263 5.18e-66   NTclustered gi|2160597414|gb|OL739372.1| 13706 g18740 i0 99.31 83.9 145 1 97 0 3 147 876 732 Syncephalastrum racemosum strain NRRL 2496 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12585 263 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Syncephalastraceae Syncephalastrum Syncephalastrum racemosum
18596665 18596665 PRJNA766854_P_NODE_235_length_662_cov_9.838863_g183_i0 PRJNA766854 235 662 9.838863 65.13327306 Syncephalastrum racemosum 13706 Fungi Fungi 671 0   NTclustered gi|175940680|gb|EU484224.1| 13706 g183 i0 99.194 56.4214501510574 372 3 56 0 288 659 1113 742 Syncephalastrum racemosum strain FSU 6155 clone 2 18S ribosomal RNA gene, partial sequence blastn 37351 671 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Syncephalastraceae Syncephalastrum Syncephalastrum racemosum
22422255 22422255 PRJNA766854_P_NODE_18858_length_152_cov_3.268293_g18731_i0 PRJNA766854 18858 152 3.268293 4.96780536 Syncephalastrum racemosum 13706 Fungi Fungi 279 5.24e-71   NTclustered gi|1473256508|gb|MH869452.1| 13706 g18731 i0 100 90 151 0 99 0 2 152 649 799 Syncephalastrum racemosum culture CBS:442.59 strain CBS 442.59 large subunit ribosomal RNA gene, partial sequence blastn 13680 279 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Syncephalastraceae Syncephalastrum Syncephalastrum racemosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;