RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA764222", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA764222 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19871413 19871413 PRJNA764222_S_NODE_17396_length_221_cov_2.660920_g17238_i0 PRJNA764222 17396 221 2.66092 5.8806332 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 403 4.69e-108   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g17238 i0 99.548 183.221719457014 221 1 100 0 1 221 666039 666259 Bdellovibrio sp. qaytius chromosome, complete genome blastn 40492 403 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
24971219 24971219 PRJNA764222_S_NODE_16820_length_224_cov_1.966102_g16662_i0 PRJNA764222 16820 224 1.966102 4.40406848 Fluviispira sanaruensis 2493639 Bacteria Bacteria 52.8 0.02   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g16662 i0 100 0.125 28 0 13 0 53 80 239269 239242 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
30906467 30906467 PRJNA764222_S_NODE_16374_length_226_cov_2.519553_g16216_i0 PRJNA764222 16374 226 2.519553 5.69418978 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 44.3 0.00452   NR MBX9840021.1 2654442 g16216 i0 35.1 0.982300884955752 74 47 98.2 1 2 223 43 115 MBX9840021.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 222 44.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;