RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA764222", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA764222 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5848430 5848430 PRJNA764222_S_NODE_9385_length_267_cov_2.622727_g9227_i0 PRJNA764222 9385 267 2.622727 7.00268109 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 337 6.019999999999998e-88   NTclustered gi|2874254096|emb|OY970179.1| 412056 g9227 i0 90.038 73.2134831460674 261 24 98 2 7 267 1727723 1727981 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 19548 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
28663907 28663907 PRJNA764222_S_NODE_20067_length_209_cov_1.586420_g19909_i0 PRJNA764222 20067 209 1.58642 3.3156178 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0232   NR MES2437692.1 2026799 g19909 i0 41.2 0.732057416267943 51 30 73.2 0 31 183 40 90 MES2437692.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 153 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;